================================================== file name: human.short sequences: 1 total length: 18000 bp GC level: 62.22 % bases masked 3147 bp ( 17.48 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- SINEs: 4 778 bp 4.32 % ALUs 2 497 bp 2.76 % MIRs 2 281 bp 1.56 % LINEs: 2 859 bp 4.77 % LINE1 1 686 bp 3.81 % LINE2 1 173 bp 0.96 % LTR elements: 3 1141 bp 6.34 % MaLRs 2 220 bp 1.22 % Retrov. 1 921 bp 5.12 % MER4_group 0 0 bp 0.00 % DNA elements: 0 0 bp 0.00 % MER1_type 0 0 bp 0.00 % MER2_type 0 0 bp 0.00 % Mariners 0 0 bp 0.00 % Unclassified: 0 0 bp 0.00 % Total interspersed repeats: 2778 bp 15.43 % Small RNA: 0 0 bp 0.00 % Satellites: 0 0 bp 0.00 % Simple repeats: 2 245 bp 1.36 % Low complexity: 0 124 bp 0.69 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element The sequence(s) were assumed to be of primate origin. RepeatMasker version 04/04/99 default ProcessRepeats version 12/12/98 SW % % % name query position in query (bp left) name matching type of repeat pos. in repeat (bp left) score div del ins sequence begin end (over) repeat class/family begin end (unaligned) 385 34.9 4.8 2.6 dna 738 926 (17074) + MIR SINE/MIR 51 243 (19) 6319 9.4 0.7 0.3 dna 1498 2418 (15582) C LTR5 LTR/Retroviral (0) 969 2 351 22.8 1.1 3.3 dna 3877 3968 (14032) C MIR SINE/MIR (114) 148 59 180 33.5 5.2 2.9 dna 6431 6603 (11397) + L2 LINE/L2 2370 2546 (164) 327 21.0 3.7 0.0 dna 7795 7875 (10125) C MLT1D LTR/MaLR (116) 389 306 613 14.1 11.6 0.0 dna 7963 8101 (9899) C MLT1C LTR/MaLR (279) 187 23 248 5.7 0.5 15.3 dna 12644 12852 (5148) + (CACCC)n Simple_repeat 1 178 (0) * 307 11.6 2.9 7.0 dna 12805 12976 (5024) + C-rich Low_complexity 3 167 (0) 741 21.6 8.0 0.6 dna 16621 16782 (1218) + FAM SINE/Alu 1 174 (1) 2529 21.8 8.9 1.5 dna 16786 17412 (588) C L1MB3 LINE/L1 (18) 6167 5483 2129 9.2 0.0 6.6 dna 17413 17747 (253) C AluSq SINE/Alu (0) 313 1 2529 21.8 8.9 1.5 dna 17748 17806 (194) C L1MB3 LINE/L1 (702) 5483 5430 324 0.0 0.0 0.0 dna 17830 17865 (135) + (CA)n Simple_repeat 2 37 (0)