================================================== file name: mouse sequences: 1 total length: 915699 bp GC level: 47.76 % bases masked: 219400 bp ( 23.96 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- SINEs: 367 47980 bp 5.24 % B1s 142 16048 bp 1.75 % B2-B4 176 28408 bp 3.10 % IDs 35 2423 bp 0.26 % MIRs 14 1101 bp 0.12 % LINEs: 114 73958 bp 8.08 % LINE1 106 73247 bp 8.00 % LINE2 8 711 bp 0.08 % LTR elements: 170 70357 bp 7.68 % MaLRs 85 22413 bp 2.45 % ERVL 6 2690 bp 0.29 % ERV_classI 4 914 bp 0.10 % ERV_classII 24 28164 bp 3.08 % DNA elements: 20 3744 bp 0.41 % MER1_type 13 2095 bp 0.23 % MER2_type 4 1136 bp 0.12 % Unclassified: 3 628 bp 0.07 % Total interspersed repeats: 196667 bp 21.48 % Small RNA: 3 169 bp 0.02 % Satellites: 0 0 bp 0.00 % Simple repeats: 289 18583 bp 2.03 % Low complexity: 69 4420 bp 0.48 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element The sequence(s) were assumed to be of rodent origin. RepeatMasker version 03/03/2000 default ProcessRepeats version 03/03/2000 Repbase version 02/29/2000 SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 540 3.0 0.0 0.0 mouse 214 279 (915420) + (GA)n Simple_repeat 2 67 (0) 555 1.6 0.0 0.0 mouse 1091 1154 (914545) + (CA)n Simple_repeat 2 65 (0) 267 17.1 0.0 0.0 mouse 1726 1766 (913933) + tRNA-Ala-GCG tRNA 9 49 (26) 700 21.7 4.3 0.0 mouse 1828 1965 (913734) + B1-F SINE/Alu 1 144 (3) 409 30.6 2.8 0.0 mouse 2104 2211 (913488) + PB1D7 SINE/Alu 2 112 (9) 392 25.8 0.8 4.8 mouse 2259 2382 (913317) + B1-F SINE/Alu 27 145 (2) 290 12.3 2.8 22.6 mouse 2456 2561 (913138) + PB1D9 SINE/Alu 28 112 (7) 320 21.6 12.2 1.4 mouse 2854 2927 (912772) + PB1D7 SINE/Alu 26 107 (14) 442 33.5 6.5 0.7 mouse 3015 3169 (912530) C RSINE1 SINE/B4 (0) 165 2 354 25.8 14.2 2.6 mouse 3475 3629 (912070) C MER31A LTR/ERV1 (307) 178 6 255 18.2 0.9 0.0 mouse 3772 3825 (911874) + PB1D7 SINE/Alu 75 119 (2) 246 23.6 4.4 0.0 mouse 4068 4146 (911553) + ID3 SINE/ID 2 83 (0) 326 4.3 4.3 0.0 mouse 4149 4195 (911504) + (GAAA)n Simple_repeat 2 50 (0) 235 26.5 10.8 0.0 mouse 5269 5351 (910348) C PB1D10 SINE/Alu (6) 112 21 394 21.0 3.7 0.0 mouse 6207 6287 (909412) C B1-F SINE/Alu (1) 146 63 726 31.2 5.4 1.9 mouse 6366 6467 (909232) + L1MEc LINE/L1 240 337 (6188) 192 7.7 0.0 0.0 mouse 6468 6493 (909206) + (CAGAA)n Simple_repeat 4 29 (0) 726 31.2 5.4 1.9 mouse 6494 6762 (908937) + L1MEc LINE/L1 337 624 (5901) 347 31.9 7.2 1.2 mouse 6836 7001 (908698) + L1MEc LINE/L1 761 936 (5589) 246 24.0 2.0 0.0 mouse 7087 7136 (908563) C ID3 SINE/ID (7) 72 22 293 30.6 2.7 0.9 mouse 7140 7250 (908449) + L1MEc LINE/L1 966 1078 (5447) 235 32.3 3.1 0.0 mouse 7522 7586 (908113) + ID3 SINE/ID 13 79 (0) 297 25.6 1.3 2.6 mouse 7635 7712 (907987) + ID4 SINE/ID 1 77 (2) 744 28.6 2.4 1.4 mouse 7900 8109 (907590) + B3 SINE/B2 14 225 (0) 375 23.8 0.0 1.2 mouse 8356 8435 (907264) + PB1D10 SINE/Alu 31 109 (9) 803 32.5 8.3 1.9 mouse 8645 9127 (906572) + L1MEc LINE/L1 2729 3242 (2904) 277 29.7 7.6 0.0 mouse 9202 9319 (906380) + L1MEc LINE/L1 3521 3647 (2499) 317 26.5 2.4 3.0 mouse 9541 9665 (906034) C PB1D10 SINE/Alu (28) 90 20 562 24.6 5.7 0.0 mouse 10983 11104 (904595) C RSINE1 SINE/B4 (24) 141 13 974 6.8 1.4 0.0 mouse 11192 11338 (904361) + (GAAA)n Simple_repeat 3 151 (0) 186 13.3 0.0 0.0 mouse 11466 11495 (904204) + (TTA)n Simple_repeat 1 30 (0) 308 25.3 6.0 0.0 mouse 11607 11689 (904010) + B4A SINE/B4 80 167 (125) * 588 13.9 0.0 0.0 mouse 11618 11703 (903996) + B1_MM SINE/Alu 8 93 (54) 265 24.0 8.0 1.3 mouse 11661 11735 (903964) C PB1D9 SINE/Alu (38) 81 2 * 242 24.1 1.7 0.0 mouse 11692 11749 (903950) C B4A SINE/B4 (161) 131 73 * 298 19.7 10.5 4.0 mouse 12225 12300 (903399) + RSINE1 SINE/B4 4 84 (81) 21 0.0 0.0 0.0 mouse 14908 14928 (900771) + AT_rich Low_complexity 1 21 (0) 1033 10.3 0.0 0.7 mouse 17488 17633 (898066) + B1_MM SINE/Alu 2 146 (1) 1159 5.3 0.0 2.0 mouse 17733 17882 (897817) + B1_MM SINE/Alu 1 147 (0) 320 29.5 8.6 3.6 mouse 19714 19852 (895847) C B4A SINE/B4 (146) 146 1 395 32.6 0.0 2.3 mouse 21256 21387 (894312) + RSINE1 SINE/B4 4 132 (33) 742 19.1 1.4 2.7 mouse 21564 21710 (893989) C B1_MM SINE/Alu (2) 145 1 595 16.4 5.7 2.5 mouse 21923 22044 (893655) C B1_MM SINE/Alu (21) 126 1 263 20.2 1.0 0.0 mouse 22202 22300 (893399) + (TG)n Simple_repeat 2 101 (0) 284 29.9 0.8 0.0 mouse 22359 22485 (893214) + (TG)n Simple_repeat 2 129 (0) 205 29.9 0.8 0.0 mouse 22507 22623 (893076) + (TG)n Simple_repeat 1 118 (0) 192 12.5 0.0 0.0 mouse 22924 22955 (892744) + (CGGG)n Simple_repeat 1 32 (0) 243 10.3 0.0 0.0 mouse 23263 23301 (892398) + (CA)n Simple_repeat 1 39 (0) 324 0.0 0.0 0.0 mouse 23703 23738 (891961) + (CA)n Simple_repeat 2 37 (0) 202 3.6 3.6 0.0 mouse 24571 24598 (891101) + (CCCCCA)n Simple_repeat 3 31 (0) 261 24.6 17.5 4.4 mouse 24676 24789 (890910) C RSINE1 SINE/B4 (35) 130 2 335 34.1 8.3 1.2 mouse 24936 25256 (890443) C L1MB3 LINE/L1 (178) 6007 5649 556 21.4 7.8 14.6 mouse 25501 25808 (889891) + B4 SINE/B4 1 287 (4) 308 9.1 0.0 5.5 mouse 28118 28172 (887527) + PB1D7 SINE/Alu 70 121 (0) 348 18.7 2.2 15.7 mouse 28376 28509 (887190) + PB1D10 SINE/Alu 1 116 (2) 348 22.7 0.0 3.2 mouse 28541 28638 (887061) + ID5 SINE/ID 3 70 (13) 416 23.2 0.8 7.2 mouse 30661 30785 (884914) C PB1D10 SINE/Alu (1) 117 1 304 22.1 8.8 1.5 mouse 30790 30857 (884842) C ID3 SINE/ID (6) 73 1 239 5.3 0.0 2.6 mouse 31834 31871 (883828) + (CCCCCA)n Simple_repeat 6 42 (0) 261 8.3 0.0 0.0 mouse 32033 32068 (883631) + (T)n Simple_repeat 1 36 (0) 225 0.0 0.0 0.0 mouse 32657 32681 (883018) + (CAGG)n Simple_repeat 3 27 (0) 261 0.0 0.0 0.0 mouse 35273 35301 (880398) + (TTTTA)n Simple_repeat 2 30 (0) 429 2.0 0.0 0.0 mouse 35997 36046 (879653) + (CA)n Simple_repeat 1 50 (0) 218 20.0 0.0 2.0 mouse 37306 37355 (878344) + (CCCTG)n Simple_repeat 4 52 (0) 891 12.6 0.7 3.7 mouse 39078 39367 (876332) + (TG)n Simple_repeat 1 281 (0) 183 4.2 0.0 0.0 mouse 44443 44466 (871233) + (TTTG)n Simple_repeat 1 24 (0) 354 30.5 13.7 2.1 mouse 45922 46111 (869588) + B4 SINE/B4 9 220 (71) 243 21.7 0.0 0.0 mouse 50358 50417 (865282) + GA-rich Low_complexity 2 61 (0) 206 25.7 0.0 1.4 mouse 50592 50665 (865034) + (CA)n Simple_repeat 1 73 (0) 201 14.3 0.0 0.0 mouse 56616 56650 (859049) + (CCCCCA)n Simple_repeat 2 36 (0) 957 5.1 0.0 0.0 mouse 57074 57191 (858508) + B1_MM SINE/Alu 28 145 (2) 308 25.8 8.3 2.3 mouse 58274 58405 (857294) C B1-F SINE/Alu (3) 144 5 877 16.3 8.3 3.7 mouse 58504 58808 (856891) + ORR1C LTR/MaLR 1 370 (0) 412 29.7 13.4 4.4 mouse 59033 59375 (856324) C MLT1C LTR/MaLR (43) 424 51 334 14.8 5.0 0.4 mouse 69712 69793 (845906) C PB1D10 SINE/Alu (0) 118 62 396 0.0 0.0 0.0 mouse 71179 71222 (844477) + (TG)n Simple_repeat 2 45 (0) 405 0.0 0.0 0.0 mouse 78927 78971 (836728) + (TG)n Simple_repeat 2 46 (0) 735 9.3 0.0 0.9 mouse 81039 81145 (834554) C B1_MM SINE/Alu (41) 106 1 228 10.0 0.0 0.0 mouse 82536 82575 (833124) + (A)n Simple_repeat 1 40 (0) 211 39.0 0.0 0.0 mouse 84296 84395 (831304) + C-rich Low_complexity 1 100 (0) 407 21.7 4.6 9.7 mouse 86208 86218 (829481) + B4A SINE/B4 81 91 (201) 1081 2.7 0.0 3.4 mouse 86219 86365 (829334) + B1_MM SINE/Alu 6 147 (0) 407 21.7 4.6 9.7 mouse 86366 86382 (829317) + B4A SINE/B4 91 246 (46) 187 19.1 9.1 11.8 mouse 86813 86922 (828777) + L2 LINE/L2 3144 3250 (22) 770 16.3 13.4 5.9 mouse 87942 88143 (827556) C ORR1B LTR/MaLR (153) 217 1 345 2.4 0.0 0.0 mouse 89150 89191 (826508) + (GGAAA)n Simple_repeat 4 45 (0) 361 31.2 12.8 5.0 mouse 92755 93152 (822547) C MLT1C LTR/MaLR (33) 434 6 347 35.8 1.7 1.7 mouse 93517 93692 (822007) + (TGGA)n Simple_repeat 2 177 (0) * 445 36.2 0.0 1.1 mouse 93674 93850 (821849) + (TGGG)n Simple_repeat 4 178 (0) 381 33.9 1.1 1.7 mouse 93777 93953 (821746) + (TGGA)n Simple_repeat 4 179 (0) * 380 31.1 2.5 1.9 mouse 93979 94139 (821560) + (TGGG)n Simple_repeat 3 164 (0) 298 27.9 0.0 3.8 mouse 94251 94329 (821370) + PB1D7 SINE/Alu 11 86 (35) 285 28.1 1.2 0.0 mouse 94831 94912 (820787) + (TGGA)n Simple_repeat 2 84 (0) 211 26.8 0.0 2.2 mouse 94931 95068 (820631) + (TGGA)n Simple_repeat 3 137 (0) 434 30.4 2.9 0.0 mouse 95083 95253 (820446) + (TGGA)n Simple_repeat 4 179 (0) 213 19.5 8.0 1.8 mouse 95559 95671 (820028) + (TTATA)n Simple_repeat 5 124 (0) 205 11.5 6.4 2.6 mouse 95680 95757 (819942) + (TATAA)n Simple_repeat 2 82 (0) 321 29.2 5.0 6.7 mouse 96002 96299 (819400) + L1M4 LINE/L1 3652 3944 (2202) 842 15.2 0.0 0.0 mouse 96355 96486 (819213) + B1-F SINE/Alu 9 140 (7) 901 26.7 8.2 5.3 mouse 96601 96956 (818743) C ORR1D LTR/MaLR (0) 366 1 1039 19.6 2.2 2.7 mouse 97085 97308 (818391) C B3 SINE/B2 (0) 225 3 269 29.4 2.4 3.2 mouse 97702 97827 (817872) C MTE LTR/MaLR (5) 372 248 328 20.4 3.1 4.1 mouse 99192 99289 (816410) + Charlie1 DNA/MER1_type 2659 2755 (6) 708 23.0 9.6 3.4 mouse 99561 99769 (815930) + B3 SINE/B2 3 224 (1) 551 29.7 5.7 5.4 mouse 100017 100370 (815329) C L1MC2 LINE/L1 (96) 6234 5880 213 25.0 0.0 0.0 mouse 101326 101369 (814330) + (CATATA)n Simple_repeat 6 49 (0) 872 15.6 9.9 1.0 mouse 107129 107320 (808379) C ORR1C LTR/MaLR (0) 384 176 670 20.4 1.8 5.2 mouse 107343 107566 (808133) C ORR1D LTR/MaLR (158) 226 1 334 17.2 3.2 0.0 mouse 107689 107781 (807918) + (TGGA)n Simple_repeat 4 99 (0) 387 4.1 0.0 0.0 mouse 108726 108774 (806925) + (CA)n Simple_repeat 2 50 (0) 211 23.6 0.0 1.1 mouse 110306 110359 (805340) + GA-rich Low_complexity 2 92 (0) 352 9.5 1.6 1.6 mouse 113513 113575 (802124) + (TG)n Simple_repeat 2 64 (0) 316 9.0 1.5 1.5 mouse 115430 115496 (800203) + (CCCCCA)n Simple_repeat 6 72 (0) 219 23.7 7.9 1.3 mouse 126264 126339 (789360) C MIR SINE/MIR (122) 140 60 302 9.8 2.0 0.0 mouse 128352 128402 (787297) + (TA)n Simple_repeat 1 52 (0) 23 0.0 0.0 0.0 mouse 129567 129589 (786110) + AT_rich Low_complexity 1 23 (0) 321 29.0 2.1 0.0 mouse 129982 130074 (785625) + L1M4 LINE/L1 3100 3194 (2952) 273 2.9 0.0 0.0 mouse 130807 130840 (784859) + (TTTTA)n Simple_repeat 1 34 (0) 225 23.1 18.5 0.0 mouse 131694 131758 (783941) + ID2 SINE/ID 2 78 (1) 477 0.0 0.0 0.0 mouse 131759 131811 (783888) + (CAA)n Simple_repeat 2 54 (0) 180 22.2 0.0 4.4 mouse 132016 132060 (783639) + MIR SINE/MIR 35 77 (185) 1412 6.8 3.7 0.0 mouse 132830 133020 (782679) C B2_Mm1 SINE/B2 (12) 198 1 312 28.0 10.3 0.9 mouse 140035 140141 (775558) C PB1D7 SINE/Alu (4) 117 1 261 31.9 11.2 0.9 mouse 140923 141038 (774661) C MTE LTR/MaLR (3) 374 247 254 24.4 2.3 2.3 mouse 141189 141274 (774425) C ORR1D LTR/MaLR (280) 86 1 301 31.2 0.9 3.6 mouse 142049 142160 (773539) C RSINE1 SINE/B4 (36) 129 21 1887 19.4 3.4 0.5 mouse 145032 145490 (770209) C RLTR11A LTR/ERVK (2) 525 1 459 0.0 0.0 0.0 mouse 149460 149510 (766189) + (TG)n Simple_repeat 2 52 (0) 266 21.8 0.0 0.0 mouse 153337 153391 (762308) C RMER6A LTR (733) 55 1 622 21.3 1.2 2.1 mouse 153392 153641 (762058) C RMER4 LTR (205) 304 2 543 3.1 0.0 0.0 mouse 154356 154420 (761279) + (CATATA)n Simple_repeat 2 66 (0) 1163 8.7 0.0 0.0 mouse 154421 154558 (761141) C B1_MM SINE/Alu (9) 138 1 1532 18.4 9.4 4.1 mouse 156444 156856 (758843) C RMER4 LTR (73) 436 2 1003 16.3 0.7 0.4 mouse 157201 157432 (758267) C RMER6A LTR (0) 788 512 1158 20.9 10.4 8.6 mouse 157684 158124 (757575) + MYSERV LTR/ERVK 812 1260 (5290) 271 28.4 1.4 0.0 mouse 158815 158888 (756811) C RMER19B LTR (310) 411 337 515 22.3 4.6 4.6 mouse 159836 160010 (755689) C RLTR12 LTR/ERVK (141) 213 39 1220 14.9 3.1 1.0 mouse 160812 161006 (754693) C B2_Mm2 SINE/B2 (10) 199 1 703 20.0 0.0 1.5 mouse 163436 163565 (752134) + RMER6B LTR 6 133 (316) 623 9.1 8.6 23.0 mouse 163841 164049 (751650) + RMER6B LTR 271 449 (0) 1373 22.4 5.2 2.1 mouse 164892 165217 (750482) C RLTR12 LTR/ERVK (1) 353 18 266 4.7 4.7 0.0 mouse 165401 165443 (750256) + (CAAAC)n Simple_repeat 2 46 (0) 1246 5.4 0.0 1.3 mouse 165595 165743 (749956) + B1_MM SINE/Alu 1 147 (0) 328 2.0 4.1 0.0 mouse 165746 165794 (749905) + (CAAAA)n Simple_repeat 1 51 (0) 834 15.4 8.8 2.0 mouse 166042 166363 (749336) C RMER10B LTR (0) 389 1 1186 8.8 0.0 0.0 mouse 168213 168359 (747340) + B1_MM SINE/Alu 1 147 (0) 3045 6.3 5.0 1.1 mouse 169020 169401 (746298) C MTA LTR/MaLR (0) 397 1 990 3.1 2.4 0.0 mouse 169402 169528 (746171) C MT-INTERNAL LTR/MaLR (0) 1098 969 1518 5.0 0.0 0.0 mouse 169531 169711 (745988) + B2_Mm1 SINE/B2 2 182 (28) * 4547 9.8 2.5 1.0 mouse 169709 170735 (744964) C MT-INTERNAL LTR/MaLR (118) 1358 1 272 3.1 0.0 0.0 mouse 170736 170767 (744932) C MTB LTR/MaLR (0) 411 380 893 22.4 1.4 1.4 mouse 172563 172772 (742927) C Lx2 LINE/L1 (159) 6828 6619 * 2059 17.6 4.9 1.8 mouse 172772 173157 (742542) C Lx4 LINE/L1 (234) 6820 6423 269 22.2 1.9 0.0 mouse 173158 173211 (742488) C BGLII LTR/ERVK (0) 424 370 1470 23.3 2.1 3.9 mouse 174703 175135 (740564) C Lx4 LINE/L1 (633) 6422 5998 533 33.7 4.3 1.0 mouse 175147 175449 (740250) C MYSERV LTR/ERVK (6019) 531 219 3325 19.9 2.7 1.7 mouse 175452 175683 (740016) C Lx4 LINE/L1 (1028) 6027 5799 1540 6.9 2.1 0.0 mouse 175684 175872 (739827) C B2_Mm2 SINE/B2 (14) 195 3 3325 19.9 2.7 1.7 mouse 175873 176554 (739145) C Lx4 LINE/L1 (1256) 5799 5091 698 23.0 1.1 1.6 mouse 176565 176751 (738948) C Lx4 LINE/L1 (2399) 5019 4834 * 4542 21.4 1.8 2.9 mouse 176745 177347 (738352) C Lx2 LINE/L1 (6) 6981 6373 1535 0.0 0.6 0.0 mouse 177348 177522 (738177) + (TTC)n Simple_repeat 2 177 (0) 4542 21.4 1.8 2.9 mouse 177523 177533 (738166) C Lx2 LINE/L1 (614) 6373 6363 1324 10.5 4.5 1.5 mouse 177534 177733 (737966) C B2_Mm2 SINE/B2 (3) 206 1 4542 21.4 1.8 2.9 mouse 177734 178207 (737492) C Lx2 LINE/L1 (624) 6363 5904 337 13.6 1.7 0.0 mouse 178200 178258 (737441) C Lx4 LINE/L1 (2580) 4838 4779 * 2253 25.5 2.6 1.1 mouse 178259 178952 (736747) C Lx2 LINE/L1 (5437) 1904 1201 741 25.2 4.6 9.0 mouse 179258 179689 (736010) + BGLII LTR/ERVK 12 424 (0) 319 2.0 2.0 2.0 mouse 180237 180285 (735414) + (TA)n Simple_repeat 1 49 (0) 1220 6.1 0.0 1.4 mouse 180492 180639 (735060) + B1_MM SINE/Alu 1 146 (1) 324 4.7 3.1 3.1 mouse 180641 180704 (734995) + (CAAAAA)n Simple_repeat 3 66 (0) 486 0.0 0.0 0.0 mouse 180708 180761 (734938) + (GA)n Simple_repeat 1 54 (0) 1282 12.6 7.7 0.5 mouse 181302 181523 (734176) C L1_MM LINE/L1 (20) 6578 6341 1735 29.9 1.4 4.5 mouse 182471 183051 (732648) + MYSERV LTR/ERVK 1562 2124 (4426) 1329 9.1 4.3 0.0 mouse 184013 184198 (731501) C B2_Mm1 SINE/B2 (16) 194 1 1626 20.6 2.0 6.6 mouse 184461 184902 (730797) + BGLII LTR/ERVK 3 424 (0) 5142 29.7 5.0 4.4 mouse 186829 189122 (726577) + MYSERV LTR/ERVK 191 2497 (4053) 250 23.4 5.3 1.1 mouse 189276 189369 (726330) + MYSERV LTR/ERVK 1191 1288 (870) * 463 24.6 0.0 1.8 mouse 189369 189482 (726217) + MYSERV LTR/ERVK 5465 5576 (974) 1755 25.4 8.6 2.0 mouse 189597 190237 (725462) + MYSERV LTR/ERVK 5735 6417 (133) 1536 22.9 1.4 5.4 mouse 190368 190809 (724890) + BGLII LTR/ERVK 1 424 (0) 22 0.0 0.0 0.0 mouse 194826 194847 (720852) + AT_rich Low_complexity 1 22 (0) 800 35.5 2.3 1.5 mouse 195514 195992 (719707) C MYSERV LTR/ERVK (5867) 683 201 653 28.0 2.3 3.6 mouse 197686 197992 (717707) C BGLII LTR/ERVK (97) 327 25 28 0.0 0.0 0.0 mouse 198012 198039 (717660) + AT_rich Low_complexity 1 28 (0) 2849 15.9 1.4 0.6 mouse 198047 198537 (717162) C L1_MM LINE/L1 (10) 6588 6094 1307 14.6 8.3 11.0 mouse 199667 200002 (715697) + ORR1A3 LTR/MaLR 1 327 (0) 1508 17.4 1.7 9.8 mouse 203590 203945 (711754) + ORR1A3 LTR/MaLR 1 327 (0) 932 21.6 4.5 2.5 mouse 205772 206161 (709538) + Lx4 LINE/L1 5711 7008 (46) 1005 11.2 0.7 0.7 mouse 206768 206910 (708789) C B2_Mm2 SINE/B2 (37) 172 30 2607 9.3 0.3 0.6 mouse 206911 207263 (708436) + RLTR8 LTR/ERVK 9 360 (0) 45571 5.4 0.9 0.2 mouse 207437 213186 (702513) + L1_MM LINE/L1 794 6787 (11) 1245 9.0 0.6 0.0 mouse 213188 213353 (702346) C B2_Mm1 SINE/B2 (43) 167 1 191 3.6 3.6 0.0 mouse 214319 214346 (701353) + (TTTG)n Simple_repeat 2 30 (0) 231 3.6 0.0 0.0 mouse 216419 216446 (699253) + (T)n Simple_repeat 1 28 (0) 1989 15.4 2.9 0.3 mouse 217694 218043 (697656) C Lx4 LINE/L1 (8) 7046 6688 1890 21.7 2.5 0.2 mouse 218048 218443 (697256) + Lx4 LINE/L1 6266 6670 (385) 2612 18.9 0.7 4.3 mouse 218724 219451 (696248) + RMER13B LTR 133 899 (0) 829 22.2 9.7 0.0 mouse 219791 219997 (695702) + MTC LTR/MaLR 1 227 (194) 501 9.5 15.8 2.1 mouse 220006 220100 (695599) C RMER6A LTR (0) 788 681 1636 20.6 3.9 7.7 mouse 220105 220569 (695130) C RMER6B LTR (0) 449 3 794 20.0 0.5 4.6 mouse 220574 220768 (694931) + MTB LTR/MaLR 225 411 (0) 745 22.3 17.1 1.1 mouse 222409 222732 (692967) C RMER19B LTR (0) 739 269 442 22.1 1.1 0.8 mouse 222707 222833 (692866) C RMER19B LTR (532) 207 80 * 2605 8.4 0.8 2.2 mouse 222846 223202 (692497) C RLTR8 LTR/ERVK (0) 360 9 2241 19.0 1.3 2.4 mouse 224142 224594 (691105) + RMER6B LTR 2 449 (0) 2002 14.9 2.1 8.4 mouse 225101 225622 (690077) + RMER17A LTR 1 489 (270) * 3015 20.4 4.5 4.4 mouse 225263 226035 (689664) + RMER17B LTR? 150 923 (5) 812 22.3 2.0 2.8 mouse 226720 227044 (688655) + IAPLTR1_MM LTR/ERVK 1 362 (14) 1081 12.9 17.4 0.0 mouse 227681 227881 (687818) + URR1A DNA/MER1_type 1 236 (0) 2196 20.0 1.1 2.0 mouse 228738 229187 (686512) C RMER6B LTR (0) 449 4 2309 14.8 3.4 0.3 mouse 229759 230115 (685584) C RMER19A LTR (371) 368 1 407 21.9 0.0 0.0 mouse 230446 230527 (685172) C RMER6A LTR (108) 680 599 1705 15.7 0.0 0.0 mouse 230531 230804 (684895) + L1F LINE/L1 619 892 (5915) * 16401 8.5 1.7 0.1 mouse 230803 233731 (681968) + L1F LINE/L1 767 4082 (3669) 2540 6.5 0.8 1.7 mouse 233732 234085 (681614) C IAPLTR1_MM LTR/ERVK (0) 351 1 55965 2.3 0.9 0.3 mouse 234086 240461 (675238) C IAP LTR/ERVK (0) 6415 1 2540 6.5 0.8 1.7 mouse 240462 240815 (674884) C IAPLTR1_MM LTR/ERVK (0) 351 1 22432 6.8 1.0 0.0 mouse 240817 243706 (671993) + L1_MM LINE/L1 3668 6584 (14) 25 5.1 0.0 0.0 mouse 243713 243751 (671948) + AT_rich Low_complexity 1 39 (0) 25106 7.5 0.6 0.9 mouse 244072 245527 (670172) + L1_MM LINE/L1 3280 4739 (1859) 216 0.0 0.0 0.0 mouse 245528 245551 (670148) + (CAAAA)n Simple_repeat 3 26 (0) 25106 7.5 0.6 0.9 mouse 245552 247411 (668288) + L1_MM LINE/L1 4739 6586 (12) 435 23.7 2.1 6.3 mouse 247501 247690 (668009) + RMER5 LTR? 10 191 (210) 21 3.6 0.0 0.0 mouse 247831 247858 (667841) + AT_rich Low_complexity 1 28 (0) 1074 18.5 12.2 4.7 mouse 247865 248237 (667462) C RMER6A LTR (196) 592 68 1258 18.1 4.6 6.5 mouse 248375 248789 (666910) + RMER17C LTR 8 414 (0) 884 14.8 3.6 10.1 mouse 250848 251125 (664574) + RMER17B LTR? 187 446 (482) * 1417 17.5 3.6 6.8 mouse 250893 251304 (664395) + RMER17C LTR 16 414 (0) 488 25.9 0.0 0.9 mouse 251490 251597 (664102) + RMER12 LTR 11 117 (1198) 382 32.5 0.8 0.0 mouse 251834 251953 (663746) C MURVY LTR/ERV1 (2541) 4911 4791 2347 17.7 0.6 2.0 mouse 252424 252914 (662785) C Lx2 LINE/L1 (553) 6434 5951 239 4.9 9.8 0.0 mouse 252917 252957 (662742) + Lx2 LINE/L1 6943 6987 (0) 189 0.0 0.0 0.0 mouse 252960 252980 (662719) + (CAAAA)n Simple_repeat 2 22 (0) 2036 15.8 2.9 1.1 mouse 253654 254002 (661697) C RLTR14 LTR/ERV1 (3) 379 25 208 13.5 0.0 0.0 mouse 254730 254766 (660933) + (T)n Simple_repeat 1 37 (0) 737 26.4 9.0 2.6 mouse 255242 255580 (660119) C Lx2 LINE/L1 (6) 6981 6619 * 5152 21.6 4.9 2.8 mouse 255580 257508 (658191) C L1_MM LINE/L1 (234) 6820 4859 2885 24.7 7.8 3.5 mouse 257517 258438 (657261) C Lx2 LINE/L1 (6) 6981 6020 23 0.0 0.0 0.0 mouse 258941 258963 (656736) + AT_rich Low_complexity 1 23 (0) 950 34.6 2.5 2.2 mouse 259927 260481 (655218) + MYSERV LTR/ERVK 200 756 (5794) 4397 27.7 2.9 3.3 mouse 260798 263113 (652586) + MYSERV LTR/ERVK 969 3345 (3205) 646 28.4 4.9 0.0 mouse 263132 263293 (652406) C MTC LTR/MaLR (54) 367 198 947 13.2 0.0 1.2 mouse 263295 263460 (652239) + (TTTC)n Simple_repeat 2 165 (0) 579 16.9 0.0 8.2 mouse 263461 263643 (652056) C Lx2 LINE/L1 (15) 6972 6805 3482 11.1 3.1 0.0 mouse 263647 264169 (651530) + L1 LINE/L1 4448 4986 (2432) 3984 25.0 6.5 4.3 mouse 264184 265442 (650257) + MYSERV LTR/ERVK 3340 4626 (1924) 7139 14.0 4.2 0.6 mouse 265474 266723 (648976) C L1 LINE/L1 (4265) 3153 1858 2966 16.1 0.2 0.0 mouse 266715 267248 (648451) + L1 LINE/L1 3169 3703 (3715) * 320 24.3 0.9 6.5 mouse 268303 268409 (647290) C MIR SINE/MIR (90) 172 72 268 11.4 0.0 0.0 mouse 268521 268588 (647111) C Lx2 LINE/L1 (0) 6987 6520 393 19.1 0.0 0.0 mouse 268790 268894 (646805) + CT-rich Low_complexity 2 106 (0) 1511 27.2 8.9 1.6 mouse 268938 269429 (646270) + RMER19B LTR 1 528 (193) * 2627 21.8 3.5 9.7 mouse 269426 270366 (645333) + RMER13B LTR 13 895 (4) 670 16.4 4.6 15.1 mouse 270365 270602 (645097) + RMER19B LTR 509 721 (0) * 271 23.4 0.0 1.6 mouse 270830 270893 (644806) C RMER6B LTR (364) 85 23 815 25.6 8.8 5.4 mouse 270898 271307 (644392) C BGLII LTR/ERVK (0) 424 1 3617 23.6 5.2 4.1 mouse 271308 272478 (643221) C MYSERV LTR/ERVK (0) 6550 5367 306 33.3 0.9 0.9 mouse 272855 272968 (642731) C MYSERV LTR/ERVK (1529) 5021 4908 1053 27.4 3.8 2.6 mouse 273199 273618 (642081) C MYSERV LTR/ERVK (1832) 4718 4294 451 35.1 5.9 0.9 mouse 274044 274525 (641174) C MYSERV LTR/ERVK (5784) 766 238 884 15.6 2.2 2.8 mouse 275270 275448 (640251) C L1_MM LINE/L1 (6) 6592 6415 2120 22.5 11.6 5.7 mouse 275474 276154 (639545) + RMER19B LTR 1 721 (0) 260 22.2 1.9 0.0 mouse 276375 276428 (639271) C RMER6B LTR (371) 78 24 517 23.4 8.6 0.8 mouse 277799 277926 (637773) + ORR1B LTR/MaLR 1 138 (232) 2893 14.6 1.6 1.8 mouse 277941 278428 (637271) + Lx2 LINE/L1 6501 6987 (0) 1035 16.3 5.6 0.5 mouse 278451 278646 (637053) + ORR1A3 LTR/MaLR 122 327 (0) 354 2.3 0.0 0.0 mouse 282603 282645 (633054) + (TC)n Simple_repeat 2 44 (0) * 819 3.1 0.0 0.0 mouse 282645 282742 (632957) + (TG)n Simple_repeat 1 98 (0) 3757 4.0 0.0 0.0 mouse 283356 283801 (631898) + L1_MM LINE/L1 6140 6585 (13) 1448 19.9 6.4 0.6 mouse 284049 284359 (631340) + ORR1B LTR/MaLR 1 329 (41) 4171 23.8 3.9 3.5 mouse 284576 285381 (630318) + Lx LINE/L1 5589 6535 (437) 2118 14.7 1.9 0.3 mouse 285382 285701 (629998) C ORR1A3 LTR/MaLR (2) 325 1 4171 23.8 3.9 3.5 mouse 285702 286133 (629566) + Lx LINE/L1 6535 6964 (8) 24596 6.3 0.3 0.1 mouse 286619 289721 (625978) C L1_MM LINE/L1 (12) 6586 3480 447 17.5 1.2 0.0 mouse 289741 289820 (625879) C RMER17B LTR? (661) 267 187 1272 17.9 1.2 0.8 mouse 289827 290072 (625627) + Lx2 LINE/L1 6740 6986 (1) 477 15.5 1.7 5.2 mouse 290073 290188 (625511) + RMER12 LTR 355 466 (849) 848 12.9 0.0 0.0 mouse 290307 290430 (625269) + RMER12 LTR 777 900 (415) 279 0.0 0.0 0.0 mouse 290914 290944 (624755) + (TTTG)n Simple_repeat 2 32 (0) 1432 9.2 3.1 0.0 mouse 291617 291651 (624048) C B2_Mm1 SINE/B2 (8) 202 170 315 0.0 0.0 0.0 mouse 291652 291686 (624013) + (TTTA)n Simple_repeat 3 37 (0) 1432 9.2 3.1 0.0 mouse 291687 291846 (623853) C B2_Mm1 SINE/B2 (40) 170 1 1876 22.2 0.5 0.9 mouse 291868 292309 (623390) C L1 LINE/L1 (6150) 1391 752 426 25.2 2.0 2.7 mouse 292318 292464 (623235) C L1F LINE/L1 (5768) 1039 894 397 25.9 0.0 1.9 mouse 296563 296670 (619029) + BGLII LTR/ERVK 1 106 (318) 502 14.5 3.6 5.6 mouse 297201 297372 (618327) C RLTR10 LTR/ERVK (0) 468 116 599 26.1 2.8 2.4 mouse 298023 298233 (617466) C IAP LTR/ERVK (366) 6049 5838 6473 29.7 5.3 4.5 mouse 298930 303045 (612654) C IAP LTR/ERVK (1169) 5246 1097 614 18.9 4.9 9.7 mouse 303653 303837 (611862) C IAP LTR/ERVK (6237) 178 3 502 16.4 3.4 5.2 mouse 303844 304015 (611684) C RLTR10 LTR/ERVK (0) 468 116 324 34.3 1.4 0.0 mouse 308586 308728 (606971) C MYSERV LTR/ERVK (6206) 344 200 22 3.5 0.0 0.0 mouse 308927 308955 (606744) + AT_rich Low_complexity 1 29 (0) 949 4.8 8.7 0.0 mouse 309609 309734 (605965) + B1_MM SINE/Alu 1 137 (10) 192 4.0 0.0 0.0 mouse 309735 309759 (605940) + (CAAAA)n Simple_repeat 2 26 (0) 426 15.1 0.0 0.0 mouse 309794 309866 (605833) + (TA)n Simple_repeat 2 74 (0) 180 0.0 0.0 0.0 mouse 309872 309891 (605808) + (TTTTG)n Simple_repeat 1 20 (0) 1043 11.6 0.0 0.7 mouse 309915 310061 (605638) C B1_MM SINE/Alu (1) 146 1 1419 20.0 2.5 3.4 mouse 311248 311572 (604127) + ORR1B LTR/MaLR 49 370 (0) 504 0.0 0.0 0.0 mouse 313059 313114 (602585) + (TTTA)n Simple_repeat 2 57 (0) 6898 12.1 0.8 0.8 mouse 313363 314396 (601303) C L1_MM LINE/L1 (11) 6587 5554 1401 8.2 3.8 0.0 mouse 315470 315653 (600046) + B2_Mm2 SINE/B2 3 193 (16) 1942 23.8 6.5 2.8 mouse 316348 316886 (598813) C RMER19B LTR (138) 583 25 208 27.4 0.0 1.6 mouse 316936 316997 (598702) + GA-rich Low_complexity 2 62 (0) 3930 16.2 1.2 0.5 mouse 317245 317910 (597789) C L1_MM LINE/L1 (12) 6586 5916 2688 9.4 1.6 0.5 mouse 317909 318279 (597420) + Lx5 LINE/L1 5498 5872 (1469) * 276 3.0 0.0 0.0 mouse 319266 319298 (596401) + (CA)n Simple_repeat 2 34 (0) * 405 0.0 0.0 0.0 mouse 319298 319342 (596357) + (GA)n Simple_repeat 2 46 (0) 1993 13.2 0.3 2.1 mouse 320041 320373 (595326) C ORR1A3 LTR/MaLR (0) 327 1 233 3.9 7.8 0.0 mouse 321336 321386 (594313) + (GTTTG)n Simple_repeat 1 55 (0) 1946 13.0 9.8 0.3 mouse 321388 321702 (593997) C Lx4 LINE/L1 (22) 7032 6688 2106 19.5 5.1 0.0 mouse 321704 322092 (593607) + Lx4 LINE/L1 6263 6671 (384) 252 0.0 0.0 0.0 mouse 322588 322615 (593084) + (CAAAAA)n Simple_repeat 4 31 (0) 352 26.3 0.0 0.0 mouse 322844 322938 (592761) + MTC LTR/MaLR 1 95 (326) 3583 18.2 8.9 7.3 mouse 322941 323880 (591819) + L1_MM LINE/L1 5632 6586 (12) 553 18.4 1.0 0.0 mouse 324206 324308 (591391) C RMER6A LTR (108) 680 577 6842 15.7 2.1 2.2 mouse 324313 324981 (590718) C Lx2 LINE/L1 (418) 6569 5901 270 0.0 0.0 0.0 mouse 324982 325011 (590688) + (TTG)n Simple_repeat 1 30 (0) 6842 15.7 2.1 2.2 mouse 325012 325632 (590067) C Lx2 LINE/L1 (1086) 5901 5299 1184 7.5 0.0 0.0 mouse 325633 325778 (589921) C B1_MM SINE/Alu (0) 147 2 6842 15.7 2.1 2.2 mouse 325779 326337 (589362) C Lx2 LINE/L1 (1688) 5299 4741 1998 14.2 1.5 0.9 mouse 326371 326708 (588991) + RMER12 LTR 400 739 (576) 270 26.4 0.0 2.3 mouse 326735 326821 (588878) + (TATATG)n Simple_repeat 3 87 (0) 3015 18.8 6.5 0.6 mouse 327459 328102 (587597) + RMER12 LTR 1 682 (633) 2684 7.3 0.6 0.0 mouse 328104 328459 (587240) C L1_MM LINE/L1 (16) 6582 6225 416 6.2 3.1 1.5 mouse 328460 328524 (587175) + RMER12 LTR 669 734 (581) 279 0.0 0.0 0.0 mouse 328561 328591 (587108) + (TCCA)n Simple_repeat 1 31 (0) 825 28.6 0.0 0.6 mouse 328729 328906 (586793) + RMER12 LTR 759 935 (380) 4056 17.2 2.8 1.4 mouse 329974 330882 (584817) C Lx2 LINE/L1 (10) 6970 5589 15341 0.7 0.0 0.0 mouse 333844 335524 (580175) C L1_MM LINE/L1 (14) 6584 4904 6850 11.5 3.0 0.3 mouse 336852 337877 (577822) C Lx LINE/L1 (0) 6972 5589 607 13.3 5.2 3.0 mouse 341126 341260 (574439) C Lx2B LINE/L1 (5) 6194 6057 272 5.9 0.0 0.0 mouse 341260 341293 (574406) + Lx2B LINE/L1 5662 5695 (504) * 459 22.2 7.4 5.3 mouse 344134 344322 (571377) + MYSERV LTR/ERVK 5592 5784 (766) 39 2.2 0.0 0.0 mouse 344682 344727 (570972) + AT_rich Low_complexity 1 46 (0) 2506 12.4 7.3 4.4 mouse 344902 345269 (570430) + L1_MM LINE/L1 6125 6481 (117) 225 6.5 0.0 0.0 mouse 345270 345300 (570399) + (TGGG)n Simple_repeat 3 33 (0) 2506 12.4 7.3 4.4 mouse 345301 345348 (570351) + L1_MM LINE/L1 6481 6526 (72) 180 0.0 0.0 0.0 mouse 345349 345368 (570331) + (GAA)n Simple_repeat 2 21 (0) 2506 12.4 7.3 4.4 mouse 345369 345400 (570299) + L1_MM LINE/L1 6526 6587 (11) 213 12.1 0.0 0.0 mouse 345416 345448 (570251) + (A)n Simple_repeat 1 33 (0) 361 8.8 2.9 2.9 mouse 347364 347431 (568268) + L1 LINE/L1 3233 3300 (4118) 846 25.8 4.4 3.9 mouse 348930 349012 (566687) C ORR1D LTR/MaLR (0) 366 285 3030 5.8 4.2 1.5 mouse 349013 349412 (566287) + MTB LTR/MaLR 1 411 (0) 846 25.8 4.4 3.9 mouse 349413 349692 (566007) C ORR1D LTR/MaLR (81) 285 1 1402 16.6 0.9 0.0 mouse 350455 350683 (565016) + URR1B DNA/MER1_type 1 231 (4) 181 24.0 6.0 0.0 mouse 355483 355532 (560167) + MIR SINE/MIR 98 150 (112) 323 32.8 0.0 0.8 mouse 356368 356498 (559201) + GA-rich Low_complexity 2 131 (0) 223 10.4 4.2 0.0 mouse 356520 356567 (559132) + (TTTG)n Simple_repeat 2 51 (0) 183 29.2 6.2 0.0 mouse 361918 361982 (553717) C MIR SINE/MIR (118) 144 76 263 27.8 0.0 4.8 mouse 362792 362917 (552782) + (CATATA)n Simple_repeat 4 123 (0) * 323 32.2 1.1 1.1 mouse 362832 363005 (552694) + (CATA)n Simple_repeat 4 177 (0) 315 36.0 0.0 0.6 mouse 362960 363137 (552562) + (CA)n Simple_repeat 2 178 (0) * 251 30.8 3.1 1.9 mouse 363098 363256 (552443) + (CATA)n Simple_repeat 1 161 (0) * 1533 20.3 4.3 2.9 mouse 365737 366081 (549618) + ORR1C LTR/MaLR 33 382 (2) 782 29.8 2.3 0.0 mouse 366485 366699 (549000) + B4 SINE/B4 10 229 (62) 459 27.5 3.4 4.3 mouse 368914 369212 (546487) + MTD LTR/MaLR 1 264 (113) 490 32.3 9.6 0.0 mouse 369295 369425 (546274) C L1MB3 LINE/L1 (100) 6085 5955 308 35.1 6.1 0.0 mouse 369426 369556 (546143) C L1ME2 LINE/L1 (231) 5933 5795 315 30.7 4.3 1.1 mouse 369610 369789 (545910) C L1MA5 LINE/L1 (518) 5657 5508 198 0.0 0.0 0.0 mouse 370369 370390 (545309) + (TCTG)n Simple_repeat 3 24 (0) 305 12.5 1.8 3.6 mouse 371858 371913 (543786) C B4 SINE/B4 (213) 78 24 235 18.2 0.0 0.0 mouse 372002 372045 (543654) + Lx9 LINE/L1 6803 6846 (827) 607 28.7 0.0 0.0 mouse 372095 372237 (543462) + Lx9 LINE/L1 6864 7006 (667) 1295 18.5 19.4 1.2 mouse 372239 372563 (543136) C ORR1C LTR/MaLR (0) 384 1 1654 25.9 4.4 1.8 mouse 372565 373059 (542640) + Lx9 LINE/L1 7004 7511 (173) 375 26.2 5.6 1.9 mouse 373643 373749 (541950) + PB1D7 SINE/Alu 5 115 (6) 655 31.5 4.9 1.9 mouse 373773 374096 (541603) + L1MB8 LINE/L1 5572 5905 (270) * 760 32.0 11.3 0.3 mouse 373931 374302 (541397) + L1MB3 LINE/L1 5737 6149 (36) 506 25.0 3.7 0.0 mouse 374403 374510 (541189) + B4A SINE/B4 2 113 (179) 340 33.1 0.7 0.7 mouse 375717 375864 (539835) + GA-rich Low_complexity 6 153 (0) 243 31.1 1.5 2.3 mouse 375871 376002 (539697) + (TGGA)n Simple_repeat 3 133 (0) 428 28.5 1.3 3.4 mouse 376017 376601 (539098) + GA-rich Low_complexity 1 572 (0) 267 17.3 0.0 0.0 mouse 377276 377327 (538372) + (CA)n Simple_repeat 2 53 (0) 235 30.5 3.4 0.0 mouse 377341 377399 (538300) C B4A SINE/B4 (199) 93 33 180 0.0 0.0 0.0 mouse 379059 379078 (536621) + (CA)n Simple_repeat 1 20 (0) 240 5.9 0.0 0.0 mouse 379343 379376 (536323) + (TTTTG)n Simple_repeat 2 35 (0) 2133 18.3 2.4 0.7 mouse 379378 379786 (535913) C Lx4 LINE/L1 (21) 7033 6618 417 25.1 1.7 5.0 mouse 380160 380338 (535361) + (TCTCTG)n Simple_repeat 3 175 (0) 846 9.7 5.1 1.6 mouse 383079 383374 (532325) + (TGGA)n Simple_repeat 3 307 (0) 2498 16.5 10.7 3.0 mouse 383439 384023 (531676) C RMER19A LTR (0) 739 24 3530 7.3 0.2 1.2 mouse 384030 384522 (531177) + L1_MM LINE/L1 6099 6586 (12) 419 1.8 3.6 0.0 mouse 384523 384577 (531122) + (GAAA)n Simple_repeat 1 57 (0) 318 29.7 1.2 1.2 mouse 384619 384877 (530822) + (TGGA)n Simple_repeat 1 259 (0) 249 10.8 0.0 0.0 mouse 386052 386088 (529611) + (TTTTC)n Simple_repeat 2 38 (0) 522 8.3 0.0 0.0 mouse 387315 387386 (528313) + (CAG)n Simple_repeat 1 72 (0) 4005 18.7 2.9 1.5 mouse 389864 390591 (525108) + RMER19 LTR 1 738 (0) 810 26.8 2.4 2.4 mouse 392306 392518 (523181) + B3 SINE/B2 2 214 (11) 468 0.0 0.0 0.0 mouse 392774 392825 (522874) + (TGG)n Simple_repeat 3 54 (0) 602 28.2 9.4 3.2 mouse 392888 393227 (522472) + L1MB6 LINE/L1 5811 6171 (4) 266 22.8 2.1 1.7 mouse 396091 396159 (519540) + PB1D7 SINE/Alu 1 58 (63) 723 24.3 4.7 4.1 mouse 396217 396385 (519314) C B3 SINE/B2 (54) 171 2 260 21.6 11.2 5.2 mouse 396748 396863 (518836) + ORR1D LTR/MaLR 60 182 (184) 379 61.4 1.2 0.0 mouse 396864 397034 (518665) + polypyrimidine Low_complexity 5 177 (0) 201 7.4 0.0 0.0 mouse 397041 397067 (518632) + (TCTCCC)n Simple_repeat 4 30 (0) 364 20.0 7.0 2.0 mouse 397162 397261 (518438) + ORR1D LTR/MaLR 260 364 (2) 1173 17.4 7.1 0.0 mouse 397950 398161 (517538) C ORR1B LTR/MaLR (0) 370 144 1183 6.8 0.0 0.0 mouse 398502 398648 (517051) C B1_MM SINE/Alu (0) 147 1 264 20.4 2.0 0.0 mouse 398834 398882 (516817) C B1-F SINE/Alu (30) 117 68 1292 18.0 0.8 0.0 mouse 398900 399189 (516510) C Lx3 LINE/L1 (1220) 5823 5533 785 21.2 2.0 3.0 mouse 399191 399388 (516311) C MTD LTR/MaLR (212) 207 12 663 14.5 3.1 1.3 mouse 399839 399997 (515702) + (TCTA)n Simple_repeat 3 164 (0) 226 13.5 0.0 0.0 mouse 400007 400043 (515656) + (T)n Simple_repeat 1 37 (0) 1180 7.5 0.0 0.0 mouse 400046 400192 (515507) C B1_MM SINE/Alu (0) 147 1 273 15.7 4.9 2.0 mouse 400225 400326 (515373) + (TCTA)n Simple_repeat 4 108 (0) 235 23.8 0.0 0.0 mouse 400337 400399 (515300) + MLT2B2 LTR/ERVL 453 515 (0) 779 23.3 5.1 4.7 mouse 400640 400854 (514845) + B3 SINE/B2 1 216 (9) 4496 21.5 2.2 1.8 mouse 401319 402405 (513294) + Lx9 LINE/L1 6261 7330 (343) 317 16.7 0.0 0.0 mouse 402429 402482 (513217) C B1-F SINE/Alu (35) 112 59 423 0.0 0.0 0.0 mouse 402496 402542 (513157) + (TG)n Simple_repeat 2 48 (0) 281 2.6 2.6 0.0 mouse 402627 402664 (513035) + (TTGG)n Simple_repeat 2 40 (0) 374 27.1 1.7 2.3 mouse 402729 402905 (512794) + (TG)n Simple_repeat 2 177 (0) 426 3.9 0.0 0.0 mouse 403822 403873 (511826) + (TTGG)n Simple_repeat 1 52 (0) 1660 12.1 0.9 0.0 mouse 405742 405973 (509726) C URR1B DNA/MER1_type (0) 235 2 425 17.6 10.1 1.7 mouse 407588 407706 (507993) + MLT1B LTR/MaLR 111 239 (151) 373 26.9 10.6 8.2 mouse 409697 409895 (505804) + MER45B DNA/AcHobo 363 571 (469) 530 24.5 1.4 4.9 mouse 409896 410038 (505661) C B1-F SINE/Alu (7) 140 3 373 26.9 10.6 8.2 mouse 410039 410094 (505605) + MER45B DNA/AcHobo 571 624 (416) 259 28.7 0.0 4.3 mouse 410158 410251 (505448) + MER45B DNA/AcHobo 749 838 (202) 664 22.8 0.0 1.4 mouse 410494 410638 (505061) C B1-F SINE/Alu (1) 146 4 512 24.8 4.5 0.0 mouse 410745 410877 (504822) + B4A SINE/B4 152 290 (2) 541 29.3 7.1 6.4 mouse 412149 412414 (503285) C B4 SINE/B4 (16) 275 8 271 28.6 1.6 0.0 mouse 412451 412513 (503186) C PB1D7 SINE/Alu (46) 75 12 213 29.6 0.0 1.2 mouse 415806 415886 (499813) + C-rich Low_complexity 1 80 (0) 410 18.8 7.1 0.0 mouse 417314 417398 (498301) + B4A SINE/B4 2 92 (200) 252 11.5 0.0 13.5 mouse 417855 417906 (497793) C ID4 SINE/ID (2) 77 33 492 3.2 0.0 0.0 mouse 417949 418010 (497689) + (TG)n Simple_repeat 2 63 (0) 515 25.9 13.0 1.7 mouse 418384 418684 (497015) + L1MB7 LINE/L1 5726 6060 (115) 629 23.5 5.9 6.8 mouse 418685 418905 (496794) + B4 SINE/B4 1 219 (72) 311 21.6 0.0 1.0 mouse 419379 419475 (496224) + (TG)n Simple_repeat 1 96 (0) 465 28.0 0.4 4.0 mouse 419504 419784 (495915) + (TG)n Simple_repeat 1 270 (0) 286 27.0 0.6 0.6 mouse 420017 420179 (495520) + (CA)n Simple_repeat 2 164 (0) 2209 16.9 5.6 1.9 mouse 420190 420656 (495043) + RMER4 LTR 18 501 (8) 604 28.4 8.7 0.0 mouse 420750 420978 (494721) C MYSERV LTR/ERVK (2130) 4420 4172 186 7.1 0.0 0.0 mouse 421554 421581 (494118) + (T)n Simple_repeat 1 28 (0) 761 16.4 2.3 9.3 mouse 422675 422866 (492833) + RMER4 LTR 2 179 (330) 441 0.0 0.0 0.0 mouse 422867 422915 (492784) + (TAA)n Simple_repeat 3 51 (0) 761 16.4 2.3 9.3 mouse 422916 422936 (492763) + RMER4 LTR 179 200 (309) 236 28.1 1.1 0.0 mouse 422937 423025 (492674) + CT-rich Low_complexity 3 92 (0) 644 16.9 7.0 0.0 mouse 423055 423196 (492503) + RMER4 LTR 226 377 (132) 834 17.6 1.4 2.6 mouse 424447 424665 (491034) C B4 SINE/B4 (3) 288 3 293 28.9 0.0 1.2 mouse 424672 424754 (490945) C PB1D7 SINE/Alu (10) 111 30 343 15.4 0.0 4.4 mouse 425381 425471 (490228) + GA-rich Low_complexity 3 89 (0) 308 17.6 0.0 2.7 mouse 425964 426037 (489662) + GA-rich Low_complexity 3 74 (0) 198 0.0 0.0 0.0 mouse 427586 427607 (488092) + (A)n Simple_repeat 1 22 (0) 324 0.0 0.0 0.0 mouse 429368 429403 (486296) + (TC)n Simple_repeat 1 36 (0) * 333 0.0 0.0 0.0 mouse 429403 429439 (486260) + (CA)n Simple_repeat 1 37 (0) 415 17.7 1.6 2.4 mouse 429610 429733 (485966) + GA-rich Low_complexity 1 123 (0) 211 13.3 0.0 4.4 mouse 430515 430559 (485140) + (CTGGGG)n Simple_repeat 2 44 (0) 308 21.9 1.4 1.4 mouse 430675 430747 (484952) + ID4 SINE/ID 3 75 (4) 429 23.7 4.1 1.0 mouse 430759 430855 (484844) + PB1D10 SINE/Alu 8 107 (11) 433 26.1 21.0 1.1 mouse 430883 431058 (484641) + B3 SINE/B2 4 214 (11) 231 22.0 0.0 1.7 mouse 432288 432346 (483353) + GA-rich Low_complexity 2 59 (0) 282 2.9 0.0 0.0 mouse 432859 432893 (482806) + (GA)n Simple_repeat 2 36 (0) 282 26.8 4.9 0.0 mouse 435164 435245 (480454) C MER45A DNA/AcHobo (1) 177 92 186 4.3 0.0 0.0 mouse 435908 435930 (479769) + (TCCCC)n Simple_repeat 4 26 (0) 225 15.4 0.0 0.0 mouse 436589 436627 (479072) + G-rich Low_complexity 6 44 (0) 237 14.5 7.2 0.0 mouse 436881 436949 (478750) + G-rich Low_complexity 3 76 (0) 988 23.9 1.6 0.0 mouse 438413 438600 (477099) C B4 SINE/B4 (74) 217 27 259 29.7 9.3 5.1 mouse 439142 439259 (476440) C MTE LTR/MaLR (0) 377 255 435 20.9 4.4 7.6 mouse 439608 439765 (475934) C RMER15 Unknown (412) 154 2 251 34.2 0.0 1.8 mouse 439965 440078 (475621) C MSTC LTR/MaLR (266) 162 51 615 14.9 3.0 1.7 mouse 440108 440418 (475281) + (TG)n Simple_repeat 1 315 (0) 3601 14.9 4.2 0.9 mouse 441041 441712 (473987) + Lx2B LINE/L1 5589 6193 (6) 807 24.6 6.3 5.4 mouse 441816 442165 (473534) C ORR1D LTR/MaLR (13) 353 1 709 23.4 1.1 6.5 mouse 442166 442349 (473350) C B4 SINE/B4 (116) 175 2 552 30.5 12.4 1.4 mouse 442350 442612 (473087) C MLT1A1 LTR/MaLR (37) 328 41 1270 28.5 6.6 1.2 mouse 442620 443122 (472577) + HERVL LTR/ERVL 4505 5071 (693) 552 21.9 30.2 0.6 mouse 443384 443506 (472193) + B3 SINE/B2 5 90 (135) 243 0.0 0.0 0.0 mouse 443507 443533 (472166) + (CA)n Simple_repeat 2 28 (0) 552 21.9 30.2 0.6 mouse 443534 443578 (472121) + B3 SINE/B2 90 223 (2) 670 19.7 0.8 3.0 mouse 443583 443714 (471985) C B1-F SINE/Alu (17) 130 2 866 26.2 10.3 8.5 mouse 444036 444531 (471168) + MLT2B3 LTR/ERVL 11 515 (39) 240 18.4 6.1 0.0 mouse 444570 444618 (471081) + LTR16A1 LTR/ERV 101 152 (305) 380 21.3 1.6 4.1 mouse 447983 448104 (467595) C MTD LTR/MaLR (0) 419 301 243 0.0 0.0 0.0 mouse 448244 448270 (467429) + (CTG)n Simple_repeat 2 28 (0) 291 10.9 1.6 3.1 mouse 448273 448336 (467363) + (TTC)n Simple_repeat 3 65 (0) 313 31.4 3.6 6.4 mouse 448337 448363 (467336) C B4 SINE/B4 (46) 246 220 1111 9.6 0.0 0.7 mouse 448364 448509 (467190) C B1_MM SINE/Alu (0) 147 3 551 21.1 0.8 4.9 mouse 448513 448635 (467064) C B1_MM SINE/Alu (14) 133 16 313 31.4 3.6 6.4 mouse 448636 448652 (467047) C B4 SINE/B4 (72) 220 81 194 0.0 0.0 3.7 mouse 448726 448752 (466947) + (TTTTG)n Simple_repeat 1 26 (0) 354 29.6 8.2 0.0 mouse 448753 448850 (466849) C PB1D7 SINE/Alu (15) 106 1 286 31.6 3.8 0.8 mouse 448857 448989 (466710) C L1M4 LINE/L1 (311) 5864 5728 1435 24.5 3.4 3.8 mouse 449023 449543 (466156) C MT2A LTR/MaLR (11) 589 1 584 26.3 13.1 1.1 mouse 449551 449725 (465974) C B3 SINE/B2 (28) 197 2 248 26.4 2.2 1.1 mouse 449730 449820 (465879) C L1M4 LINE/L1 (429) 5734 5643 469 25.2 16.5 0.0 mouse 450236 450362 (465337) + B3A SINE/B2 1 148 (62) 479 5.6 1.4 0.0 mouse 450363 450433 (465266) + (CA)n Simple_repeat 1 72 (0) 266 4.6 6.2 6.2 mouse 450435 450499 (465200) + (CAGAGA)n Simple_repeat 2 66 (0) 450 27.6 14.7 0.0 mouse 451144 451313 (464386) C MTE LTR/MaLR (24) 353 159 210 9.1 0.0 0.0 mouse 451403 451435 (464264) + (TTCC)n Simple_repeat 3 35 (0) 629 17.1 0.9 0.9 mouse 451455 451565 (464134) C B1-F SINE/Alu (36) 111 1 1044 21.1 4.8 2.4 mouse 451626 451834 (463865) C B3 SINE/B2 (11) 214 1 257 23.8 14.7 5.6 mouse 451888 452030 (463669) C L1M4 LINE/L1 (1194) 4952 4797 2264 16.1 9.5 6.0 mouse 452079 452375 (463324) + MTC LTR/MaLR 12 421 (0) 2264 13.5 4.1 9.0 mouse 452376 452818 (462881) + MTC LTR/MaLR 1 421 (0) 397 29.7 3.0 0.0 mouse 452917 453017 (462682) C PB1D10 SINE/Alu (9) 109 6 450 20.7 7.4 0.0 mouse 453029 453149 (462550) C L1M4 LINE/L1 (1372) 4774 4645 668 19.5 7.0 0.0 mouse 453155 453282 (462417) + RSINE1 SINE/B4 1 137 (28) 270 0.0 0.0 0.0 mouse 453312 453341 (462358) + (CA)n Simple_repeat 1 30 (0) * 540 4.5 0.0 0.0 mouse 453341 453407 (462292) + (GA)n Simple_repeat 2 68 (0) 308 34.4 1.1 0.0 mouse 453581 453673 (462026) C L1M4 LINE/L1 (1695) 4451 4358 658 32.6 2.3 1.2 mouse 453767 454024 (461675) C MTE LTR/MaLR (4) 373 113 273 29.4 8.1 5.9 mouse 454408 454543 (461156) + MER89 LTR/ERV 412 550 (9) 860 18.5 2.5 0.0 mouse 455254 455410 (460289) + RMER15 Unknown 91 251 (315) 342 24.6 11.9 0.8 mouse 455439 455564 (460135) + RMER15 Unknown 392 531 (35) 353 28.4 4.2 0.0 mouse 456214 456308 (459391) + PB1D9 SINE/Alu 2 100 (19) 245 2.7 5.4 0.0 mouse 456314 456350 (459349) + (TCTG)n Simple_repeat 2 40 (0) 420 3.7 0.0 0.0 mouse 461371 461424 (454275) + (CA)n Simple_repeat 1 54 (0) 279 0.0 0.0 0.0 mouse 461424 461454 (454245) + (GA)n Simple_repeat 2 32 (0) * 755 16.1 7.3 0.7 mouse 462236 462372 (453327) C B1-F SINE/Alu (0) 147 2 488 3.0 0.0 3.0 mouse 464452 464518 (451181) + (TTTC)n Simple_repeat 2 66 (0) 451 16.8 2.5 13.4 mouse 466648 466766 (448933) C PB1D10 SINE/Alu (9) 109 4 * 468 21.9 9.8 0.8 mouse 466767 466832 (448867) C B4 SINE/B4 (202) 89 13 240 28.7 4.6 5.6 mouse 466737 466844 (448855) C B3 SINE/B2 (117) 108 2 * 189 10.7 0.0 0.0 mouse 467068 467095 (448604) + (T)n Simple_repeat 1 28 (0) 189 0.0 0.0 0.0 mouse 467607 467627 (448072) + (CACCC)n Simple_repeat 1 21 (0) 238 2.4 0.0 4.9 mouse 472102 472142 (443557) + (TTTTG)n Simple_repeat 2 40 (0) 198 0.0 0.0 0.0 mouse 475941 475962 (439737) + (CCCCCA)n Simple_repeat 1 22 (0) 579 27.3 17.4 2.6 mouse 479438 479770 (435929) + MTC LTR/MaLR 3 399 (22) 1191 5.6 0.0 4.3 mouse 481425 481585 (434114) C B2_Mm2 SINE/B2 (55) 154 1 331 28.9 0.0 0.0 mouse 485919 486001 (429698) C PB1D10 SINE/Alu (33) 85 3 * 427 27.8 8.0 0.0 mouse 486002 486079 (429620) C B4A SINE/B4 (201) 91 2 249 26.8 4.8 2.1 mouse 488659 488687 (427012) C B4 SINE/B4 (156) 98 1 290 24.6 0.0 1.5 mouse 488688 488752 (426947) C ID3 SINE/ID (15) 64 1 425 30.8 6.2 3.7 mouse 488875 489265 (426434) + L1MB8 LINE/L1 5724 6127 (48) 216 0.0 0.0 0.0 mouse 490295 490318 (425381) + (TTTA)n Simple_repeat 1 24 (0) 1306 5.6 0.0 0.0 mouse 490320 490479 (425220) C B2_Mm2 SINE/B2 (49) 160 1 480 28.8 4.3 0.0 mouse 490515 490653 (425046) C B4A SINE/B4 (146) 146 2 495 29.5 15.0 2.9 mouse 492933 493139 (422560) C B4A SINE/B4 (13) 279 48 556 24.9 7.5 1.2 mouse 493189 493361 (422338) C B3A SINE/B2 (19) 191 8 418 27.5 10.6 0.0 mouse 493362 493503 (422196) + MTD LTR/MaLR 3 159 (260) 342 22.4 7.1 12.5 mouse 495581 495861 (419838) + RMER5 LTR? 11 276 (125) 1247 22.3 4.1 3.9 mouse 496239 496610 (419089) + MTD LTR/MaLR 1 419 (0) 219 6.9 0.0 0.0 mouse 501863 501891 (413808) + (TG)n Simple_repeat 1 29 (0) 334 28.0 8.9 7.0 mouse 501933 502146 (413553) C B4A SINE/B4 (74) 218 1 300 26.5 12.0 0.0 mouse 502264 502380 (413319) C MLT2B2 LTR/ERVL (14) 501 371 314 33.9 4.0 2.3 mouse 502407 502580 (413119) C MT2A LTR/MaLR (82) 366 190 382 17.3 0.0 1.3 mouse 502654 502728 (412971) C MTE LTR/MaLR (298) 79 6 254 21.6 1.4 0.0 mouse 502753 502826 (412873) + (TCCA)n Simple_repeat 3 77 (0) 1831 16.4 10.4 1.5 mouse 502839 503174 (412525) C ORR1B LTR/MaLR (0) 370 5 346 24.8 0.7 1.3 mouse 503266 503418 (412281) + (TCCA)n Simple_repeat 4 155 (0) 3977 13.7 12.6 0.1 mouse 505425 506081 (409618) + RMER19A LTR 1 739 (0) 813 23.4 16.2 6.7 mouse 506130 506483 (409216) C MTD LTR/MaLR (0) 377 20 477 0.0 0.0 0.0 mouse 507342 507394 (408305) + (CA)n Simple_repeat 2 54 (0) 230 0.0 3.3 0.0 mouse 507528 507557 (408142) + (CAAAC)n Simple_repeat 2 32 (0) 635 26.1 1.9 1.9 mouse 507585 507741 (407958) C RSINE1 SINE/B4 (6) 159 3 494 17.4 0.9 0.0 mouse 507763 507871 (407828) + (TCCA)n Simple_repeat 4 113 (0) 393 25.9 8.6 3.5 mouse 507886 508001 (407698) C B3A SINE/B2 (84) 126 5 341 29.6 9.3 0.0 mouse 508085 508192 (407507) C PB1D10 SINE/Alu (0) 118 1 204 12.5 0.0 0.0 mouse 508203 508234 (407465) + (TCCC)n Simple_repeat 4 35 (0) 315 23.1 2.8 10.2 mouse 508240 508347 (407352) C PB1D7 SINE/Alu (5) 116 17 * 336 29.1 18.9 3.4 mouse 508267 508441 (407258) C B4A SINE/B4 (88) 203 2 777 23.5 3.9 0.7 mouse 508480 508632 (407067) C RSINE1 SINE/B4 (5) 160 3 860 24.1 6.6 1.4 mouse 508640 508851 (406848) C B3 SINE/B2 (2) 223 1 229 28.4 6.9 1.0 mouse 508883 508984 (406715) C L1M4 LINE/L1 (393) 5782 5675 390 28.1 15.7 3.7 mouse 509016 509232 (406467) C L1MEc LINE/L1 (4786) 1739 1497 22 3.5 0.0 0.0 mouse 509599 509627 (406072) + AT_rich Low_complexity 1 29 (0) 282 2.9 0.0 0.0 mouse 509631 509665 (406034) + (TG)n Simple_repeat 2 36 (0) 668 29.3 0.0 0.6 mouse 509667 509833 (405866) C B3A SINE/B2 (44) 166 1 347 19.1 3.7 1.5 mouse 509928 510063 (405636) + (TATG)n Simple_repeat 4 142 (0) 183 24.6 0.0 0.0 mouse 510114 510170 (405529) + (TATATG)n Simple_repeat 6 62 (0) 275 19.1 12.7 0.4 mouse 510288 510396 (405303) C B4 SINE/B4 (128) 163 2 199 21.0 6.5 8.1 mouse 510826 510887 (404812) C MER5A DNA/MER1_type (21) 168 108 1209 6.1 0.0 0.7 mouse 511405 511552 (404147) C B1_MM SINE/Alu (0) 147 1 628 23.6 12.7 0.0 mouse 511595 511759 (403940) + B3 SINE/B2 32 217 (8) 615 23.8 12.4 0.0 mouse 511814 511998 (403701) + B4 SINE/B4 10 217 (74) 2627 4.0 0.0 0.0 mouse 511999 512320 (403379) + L1_MM LINE/L1 6048 6369 (229) 951 21.8 2.0 8.1 mouse 512394 512691 (403008) C B4 SINE/B4 (0) 291 12 511 28.1 4.3 1.6 mouse 513001 513185 (402514) C MER2 DNA/MER2_type (122) 222 33 297 6.8 0.0 0.0 mouse 513314 513357 (402342) + (TG)n Simple_repeat 1 44 (0) 301 29.9 12.1 2.2 mouse 513422 513645 (402054) C B4A SINE/B4 (43) 249 4 360 0.0 0.0 0.0 mouse 513709 513748 (401951) + (TC)n Simple_repeat 1 40 (0) 338 25.2 1.7 4.3 mouse 513755 513869 (401830) C B1-F SINE/Alu (32) 115 4 341 30.8 4.4 1.9 mouse 513974 514132 (401567) C L1MC/D LINE/L1 (783) 5547 5385 534 18.3 6.1 1.5 mouse 514549 514679 (401020) C MTD LTR/MaLR (15) 404 268 827 25.3 1.9 4.1 mouse 514735 515003 (400696) C MTD LTR/MaLR (149) 270 8 309 33.1 4.0 0.8 mouse 515824 515947 (399752) + L1M4 LINE/L1 4771 4898 (1248) 203 18.9 0.0 0.0 mouse 516143 516179 (399520) + (TTA)n Simple_repeat 3 39 (0) 480 21.3 3.9 4.5 mouse 516182 516336 (399363) C RSINE1 SINE/B4 (1) 164 11 294 2.9 0.0 0.0 mouse 516353 516387 (399312) + (TG)n Simple_repeat 1 35 (0) 243 15.8 0.0 0.0 mouse 516489 516526 (399173) C RLTR11B LTR/ERVK (401) 53 16 300 31.9 16.0 1.2 mouse 516549 516717 (398982) C L1MC/D LINE/L1 (842) 5304 5111 393 22.3 11.7 12.8 mouse 516967 517048 (398651) C RMER15 Unknown (379) 187 106 1745 22.3 6.3 1.5 mouse 517049 517443 (398256) + MTD LTR/MaLR 4 417 (2) 393 22.3 11.7 12.8 mouse 517444 517548 (398151) C RMER15 Unknown (460) 106 2 341 21.7 10.6 7.5 mouse 517733 517893 (397806) C L1MC/D LINE/L1 (1524) 4622 4457 186 31.9 0.0 0.0 mouse 517913 518056 (397643) + (TG)n Simple_repeat 1 144 (0) 243 33.1 12.1 1.3 mouse 518067 518223 (397476) C B4A SINE/B4 (6) 286 113 227 20.3 16.2 1.4 mouse 518233 518306 (397393) C RSINE1 SINE/B4 (79) 86 2 441 0.0 0.0 0.0 mouse 518829 518877 (396822) + (TG)n Simple_repeat 1 49 (0) 725 21.0 0.7 0.7 mouse 518891 519028 (396671) C B3 SINE/B2 (87) 138 1 298 27.4 0.0 0.0 mouse 519113 519174 (396525) C ID3 SINE/ID (16) 63 2 783 3.2 0.0 0.0 mouse 519355 519448 (396251) + (TTC)n Simple_repeat 3 96 (0) 333 0.0 0.0 0.0 mouse 519449 519485 (396214) + (TC)n Simple_repeat 1 37 (0) 282 5.6 0.0 0.0 mouse 519486 519521 (396178) + (TG)n Simple_repeat 1 36 (0) 258 29.3 0.0 1.3 mouse 519522 519596 (396103) C B3 SINE/B2 (63) 162 89 185 0.0 0.0 3.9 mouse 520110 520135 (395564) + (TGGGGG)n Simple_repeat 6 30 (0) 21 0.0 0.0 0.0 mouse 520518 520538 (395161) + AT_rich Low_complexity 1 21 (0) 225 21.1 0.0 0.0 mouse 520559 520596 (395103) + PB1D9 SINE/Alu 7 44 (75) 1063 17.0 5.8 0.2 mouse 520735 520946 (394753) + MTD LTR/MaLR 196 374 (3) 1600 17.9 10.8 4.5 mouse 520979 521441 (394258) C RMER4 LTR (0) 509 18 930 16.2 11.2 2.5 mouse 521699 521895 (393804) + B3 SINE/B2 1 214 (11) 247 19.4 6.5 0.0 mouse 522181 522187 (393512) + (CATG)n Simple_repeat 1 6 (60) 1248 18.4 8.1 1.1 mouse 522188 522459 (393240) + B4A SINE/B4 2 292 (0) 247 19.4 6.5 0.0 mouse 522460 522513 (393186) + (CATG)n Simple_repeat 6 66 (0) 405 8.6 0.0 0.0 mouse 522556 522613 (393086) + (TG)n Simple_repeat 1 58 (0) 461 27.1 4.1 0.0 mouse 522668 522789 (392910) C RSINE1 SINE/B4 (37) 128 2 307 19.6 1.8 2.7 mouse 522927 523038 (392661) + (TG)n Simple_repeat 2 112 (0) 324 30.0 4.0 6.0 mouse 523082 523281 (392418) C MLT1E2 LTR/MaLR (83) 543 348 325 26.3 7.8 0.8 mouse 523427 523625 (392074) C L1MB2 LINE/L1 (1) 6167 5957 1434 24.1 5.2 1.6 mouse 524353 524733 (390966) C MTC LTR/MaLR (25) 396 2 471 1.8 0.0 0.0 mouse 524747 524802 (390897) + (TG)n Simple_repeat 2 57 (0) 231 25.4 0.0 0.0 mouse 524811 524865 (390834) + 4.5SRNA scRNA 34 88 (6) * 283 24.7 1.4 0.0 mouse 524817 524889 (390810) + PB1D9 SINE/Alu 41 114 (5) 282 23.2 16.2 1.2 mouse 525945 526077 (389622) C MTD LTR/MaLR (179) 240 57 225 25.4 11.3 0.0 mouse 526190 526260 (389439) + MSTD LTR/MaLR 255 333 (63) 2295 15.7 1.4 1.9 mouse 526441 526873 (388826) + Lx6 LINE/L1 6255 6685 (782) 1119 18.5 4.5 4.2 mouse 526865 527150 (388549) + Lx7 LINE/L1 7481 7767 (6) * 337 32.5 5.5 3.0 mouse 527266 527613 (388086) + MSTD-internal LTR/MaLR 110 410 (1241) 219 18.6 0.0 0.0 mouse 527678 527720 (387979) + (TG)n Simple_repeat 1 43 (0) 358 24.8 1.5 10.3 mouse 527747 527884 (387815) C B2_Mm2 SINE/B2 (83) 127 2 503 26.2 8.3 8.1 mouse 527885 528281 (387418) + MTD LTR/MaLR 1 398 (21) 346 20.0 0.0 2.7 mouse 528925 528999 (386700) C PB1D9 SINE/Alu (46) 73 1 307 29.5 10.8 4.8 mouse 529112 529362 (386337) + MTE LTR/MaLR 107 372 (5) 1403 20.3 13.2 1.9 mouse 529450 529814 (385885) + MTD LTR/MaLR 2 407 (12) 246 20.6 0.0 0.0 mouse 530019 530091 (385608) + (TG)n Simple_repeat 2 74 (0) 214 18.9 0.0 1.9 mouse 530092 530162 (385537) + CT-rich Low_complexity 1 69 (0) 301 23.0 3.8 1.9 mouse 531337 531607 (384092) + GA-rich Low_complexity 1 276 (0) 1085 5.9 0.0 3.9 mouse 531935 532087 (383612) + B1_MM SINE/Alu 1 147 (0) 207 10.5 0.0 2.6 mouse 532208 532245 (383454) + (CAAAA)n Simple_repeat 2 38 (0) 518 27.8 5.2 5.9 mouse 532263 532532 (383167) + B4 SINE/B4 24 291 (0) 318 19.4 1.1 7.3 mouse 532811 533001 (382698) + (CA)n Simple_repeat 2 180 (0) 358 32.3 10.1 3.2 mouse 534130 534318 (381381) C L1MB7 LINE/L1 (61) 6114 5913 778 21.4 8.7 0.5 mouse 534707 534902 (380797) C HERVL LTR/ERVL (398) 5366 5155 249 18.2 1.5 6.1 mouse 535151 535216 (380483) + ID3 SINE/ID 8 70 (9) 869 30.8 5.9 1.1 mouse 536297 536650 (379049) + MTE LTR/MaLR 6 376 (1) 351 18.5 1.5 0.0 mouse 536985 537049 (378650) C HERVL LTR/ERVL (2603) 3161 3096 711 25.3 7.2 5.4 mouse 537284 537671 (378028) + MTD LTR/MaLR 11 405 (14) 345 23.5 5.0 5.0 mouse 537972 538150 (377549) C MTE LTR/MaLR (0) 377 199 232 22.7 0.9 10.0 mouse 538182 538291 (377408) C ORR1D LTR/MaLR (235) 131 32 300 19.8 4.9 6.2 mouse 538488 538568 (377131) + B3A SINE/B2 1 80 (130) 21 3.6 0.0 0.0 mouse 538787 538814 (376885) + AT_rich Low_complexity 1 28 (0) 1032 23.2 2.7 0.9 mouse 538872 539091 (376608) C B3 SINE/B2 (1) 224 1 383 29.8 10.8 0.0 mouse 539175 539332 (376367) + L1MC/D LINE/L1 5328 5502 (2475) 366 3.3 5.0 0.0 mouse 539344 539403 (376296) + (CA)n Simple_repeat 2 64 (0) 432 0.0 0.0 0.0 mouse 539408 539455 (376244) + (ATTG)n Simple_repeat 2 49 (0) 652 31.2 9.8 1.9 mouse 539756 540232 (375467) C HERVL LTR/ERVL (3400) 2364 1850 719 12.5 0.0 0.0 mouse 540413 540516 (375183) + RMER6A LTR 1 104 (684) 502 30.0 12.8 3.8 mouse 541597 541886 (373813) C MER21B LTR/ERV1 (90) 773 458 321 23.1 5.5 0.0 mouse 542319 542409 (373290) + B4 SINE/B4 1 96 (195) 333 21.2 0.0 3.8 mouse 542628 542707 (372992) + B4A SINE/B4 216 292 (0) 515 21.0 4.8 4.0 mouse 543404 543527 (372172) C RSINE1 SINE/B4 (23) 142 18 258 23.2 0.0 5.8 mouse 543529 543597 (372102) C PB1D10 SINE/Alu (50) 68 4 341 30.8 4.4 1.9 mouse 543702 543860 (371839) C L1MC/D LINE/L1 (783) 5547 5385 534 18.3 6.1 1.5 mouse 544277 544407 (371292) C MTD LTR/MaLR (15) 404 268 827 25.3 1.9 4.1 mouse 544463 544731 (370968) C MTD LTR/MaLR (149) 270 8 405 15.0 0.0 0.0 mouse 550686 550785 (364914) + (TCTG)n Simple_repeat 4 103 (0) 209 3.3 3.3 0.0 mouse 551350 551379 (364320) + (TG)n Simple_repeat 1 31 (0) 584 26.1 1.5 0.0 mouse 551426 551555 (364144) C B3 SINE/B2 (93) 132 1 348 25.9 2.7 2.1 mouse 551615 551747 (363952) C PB1D10 SINE/Alu (28) 90 12 377 17.2 0.0 1.6 mouse 551809 551872 (363827) C ID3 SINE/ID (14) 65 3 603 31.2 8.8 0.7 mouse 551875 552319 (363380) C L1 LINE/L1 (1402) 5365 4885 306 0.0 0.0 0.0 mouse 552320 552353 (363346) + (TC)n Simple_repeat 2 35 (0) * 414 0.0 0.0 0.0 mouse 552353 552398 (363301) + (TG)n Simple_repeat 1 46 (0) 25 3.1 0.0 0.0 mouse 552506 552537 (363162) + AT_rich Low_complexity 1 32 (0) 1012 30.9 6.9 3.5 mouse 552784 552962 (362737) C L1 LINE/L1 (4452) 2467 2296 814 24.3 6.9 1.5 mouse 552963 553164 (362535) C B3 SINE/B2 (11) 214 2 1012 30.9 6.9 3.5 mouse 553165 553719 (361980) C L1 LINE/L1 (4623) 1675 1087 352 27.7 1.0 1.0 mouse 554079 554179 (361520) + B2_Mm2 SINE/B2 4 104 (105) 1064 11.4 0.0 1.3 mouse 554187 554335 (361364) + B1_MM SINE/Alu 1 147 (0) 556 23.5 0.8 0.0 mouse 554888 555006 (360693) + PB1D7 SINE/Alu 1 120 (1) 432 17.6 9.9 4.6 mouse 555180 555310 (360389) C B1-F SINE/Alu (4) 143 6 1154 6.7 0.0 1.3 mouse 557164 557312 (358387) C B1_MM SINE/Alu (0) 147 1 251 22.7 0.0 4.7 mouse 557555 557682 (358017) + C-rich Low_complexity 5 126 (0) 316 7.6 1.5 3.0 mouse 561143 561208 (354491) + (CAAAAA)n Simple_repeat 6 70 (0) 386 14.3 2.0 3.7 mouse 563590 563670 (352029) + RSINE1 SINE/B4 13 97 (68) 405 0.0 0.0 0.0 mouse 563809 563853 (351846) + (TC)n Simple_repeat 2 46 (0) 216 0.0 0.0 0.0 mouse 563853 563876 (351823) + (TG)n Simple_repeat 1 24 (0) * 209 10.0 0.0 0.0 mouse 565162 565191 (350508) C MIR SINE/MIR (117) 145 116 1106 23.4 4.8 0.7 mouse 565252 565520 (350179) C B4A SINE/B4 (6) 286 7 360 0.0 0.0 0.0 mouse 565549 565588 (350111) + (TG)n Simple_repeat 1 40 (0) 566 20.6 0.0 7.6 mouse 565589 565719 (349980) C RSINE1 SINE/B4 (43) 122 2 195 4.2 0.0 0.0 mouse 565792 565815 (349884) + (CAAAA)n Simple_repeat 2 25 (0) 399 4.1 0.0 0.0 mouse 565937 565985 (349714) + (TTTA)n Simple_repeat 1 49 (0) 307 20.6 4.3 1.1 mouse 566058 566149 (349550) + MTE LTR/MaLR 251 345 (32) 234 0.0 0.0 0.0 mouse 566204 566229 (349470) + (A)n Simple_repeat 1 26 (0) 180 0.0 0.0 0.0 mouse 566508 566527 (349172) + (A)n Simple_repeat 1 20 (0) 1065 18.6 10.7 9.2 mouse 566752 567133 (348566) + MTC LTR/MaLR 12 399 (22) 527 26.4 18.0 2.1 mouse 567778 568016 (347683) + B4 SINE/B4 2 278 (13) 415 18.4 4.1 4.1 mouse 568094 568191 (347508) + B1-F SINE/Alu 43 140 (7) 224 5.4 5.4 0.0 mouse 568704 568740 (346959) + T-rich Low_complexity 4 42 (0) 204 6.7 0.0 0.0 mouse 568735 568764 (346935) + (TTGG)n Simple_repeat 2 31 (0) * 1040 8.9 0.7 0.7 mouse 568783 568928 (346771) C B1_MM SINE/Alu (1) 146 1 813 23.3 4.8 1.5 mouse 569485 569690 (346009) C B3 SINE/B2 (12) 213 1 389 2.0 0.0 2.0 mouse 569930 569980 (345719) + (TG)n Simple_repeat 2 51 (0) 589 25.5 11.1 4.8 mouse 569995 570265 (345434) C B4A SINE/B4 (3) 289 2 639 30.4 8.0 0.4 mouse 571280 571555 (344144) C L1M4 LINE/L1 (950) 5196 4900 1102 10.6 2.4 0.0 mouse 571724 571893 (343806) + B2_Mm1 SINE/B2 2 175 (35) 343 9.2 6.7 1.1 mouse 571960 572078 (343621) + B2_Mm2 SINE/B2 47 208 (1) 1174 28.0 0.7 0.3 mouse 572823 573111 (342588) C B4A SINE/B4 (2) 290 1 191 24.4 0.0 0.0 mouse 573905 573949 (341750) + L2 LINE/L2 2930 2974 (298) 189 14.7 0.0 0.0 mouse 575825 575858 (339841) + (TCCC)n Simple_repeat 4 37 (0) 462 18.1 3.7 4.3 mouse 578791 578978 (336721) C RMER17C LTR (135) 279 93 477 0.0 0.0 0.0 mouse 579405 579457 (336242) + (TG)n Simple_repeat 1 53 (0) 817 27.9 3.6 4.3 mouse 579458 579724 (335975) C B4 SINE/B4 (24) 267 1 513 0.0 0.0 0.0 mouse 580504 580560 (335139) + (CA)n Simple_repeat 2 58 (0) 455 30.5 8.4 4.2 mouse 582675 582864 (332835) C B3A SINE/B2 (12) 198 1 252 0.0 0.0 0.0 mouse 584901 584928 (330771) + (TG)n Simple_repeat 2 29 (0) 655 23.3 1.3 3.1 mouse 591402 591560 (324139) C B3A SINE/B2 (42) 168 13 267 11.4 0.0 0.0 mouse 593796 593839 (321860) + (T)n Simple_repeat 1 44 (0) 1118 6.8 0.0 0.7 mouse 593841 593988 (321711) C B1_MM SINE/Alu (0) 147 1 483 25.0 2.8 1.9 mouse 594961 595068 (320631) C PB1D9 SINE/Alu (10) 109 1 378 26.8 15.7 4.5 mouse 595467 595666 (320033) + MTE LTR/MaLR 1 221 (156) 180 0.0 0.0 0.0 mouse 595667 595686 (320013) + (CAAG)n Simple_repeat 1 20 (0) 378 26.8 15.7 4.5 mouse 595687 595818 (319881) + MTE LTR/MaLR 221 337 (40) 378 0.0 0.0 0.0 mouse 596737 596778 (318921) + (TC)n Simple_repeat 2 43 (0) 315 0.0 0.0 0.0 mouse 596788 596822 (318877) + (CA)n Simple_repeat 1 35 (0) 234 0.0 0.0 0.0 mouse 598146 598171 (317528) + (CTGGGG)n Simple_repeat 2 27 (0) 378 19.2 0.0 1.6 mouse 598834 598958 (316741) + (TCCA)n Simple_repeat 1 123 (0) 901 13.2 0.0 0.0 mouse 598970 599143 (316556) + (TTCC)n Simple_repeat 1 174 (0) 232 29.6 1.2 1.2 mouse 599190 599270 (316429) C PB1D7 SINE/Alu (39) 82 2 * 360 32.8 3.9 0.0 mouse 599271 599339 (316360) C B4 SINE/B4 (204) 87 14 294 32.9 0.0 0.0 mouse 599576 599657 (316042) + ID5 SINE/ID 1 82 (1) 522 7.9 0.0 0.0 mouse 599802 599877 (315822) + (TG)n Simple_repeat 2 77 (0) 230 25.4 23.0 5.7 mouse 599906 600114 (315585) C B4A SINE/B4 (13) 279 35 395 28.1 8.1 0.6 mouse 600382 600541 (315158) C L1M4 LINE/L1 (1433) 4713 4542 468 0.0 0.0 0.0 mouse 601275 601326 (314373) + (TG)n Simple_repeat 1 52 (0) 199 0.0 6.5 0.0 mouse 601327 601357 (314342) + (GA)n Simple_repeat 2 34 (0) 210 17.1 2.4 0.0 mouse 601437 601477 (314222) + GA-rich Low_complexity 6 47 (0) 482 33.9 0.0 2.4 mouse 603329 603496 (312203) C RSINE1 SINE/B4 (0) 165 2 373 28.3 0.0 0.0 mouse 603875 603966 (311733) C L1MC/D LINE/L1 (556) 5785 5694 376 10.9 0.0 0.0 mouse 604161 604215 (311484) + B3 SINE/B2 1 55 (170) 574 30.7 6.3 4.7 mouse 604308 604737 (310962) C L1MC/D LINE/L1 (903) 5243 4807 332 28.1 3.3 2.0 mouse 604745 604897 (310802) C L1MC/D LINE/L1 (1376) 4770 4616 265 32.5 2.5 0.0 mouse 605245 605364 (310335) C L1MC/D LINE/L1 (1892) 4254 4132 222 6.2 0.0 0.0 mouse 605908 605939 (309760) + (T)n Simple_repeat 1 32 (0) 266 29.5 8.6 2.9 mouse 606080 606218 (309481) + B1-F SINE/Alu 1 147 (0) 270 0.0 0.0 0.0 mouse 606253 606282 (309417) + (TG)n Simple_repeat 2 31 (0) 607 28.2 8.7 3.6 mouse 607619 607927 (307772) C MLT1C LTR/MaLR (115) 352 28 3331 10.0 2.1 1.7 mouse 608154 608675 (307024) C L1_MM LINE/L1 (11) 6587 6064 21 0.0 0.0 0.0 mouse 608982 609002 (306697) + AT_rich Low_complexity 1 21 (0) 244 33.3 0.0 1.3 mouse 609096 609170 (306529) C ID3 SINE/ID (0) 79 6 517 26.4 10.2 2.7 mouse 609437 609744 (305955) C MTE LTR/MaLR (4) 373 1 546 1.6 0.0 0.0 mouse 610114 610176 (305523) + (GA)n Simple_repeat 2 64 (0) 261 20.9 0.0 0.0 mouse 610432 610474 (305225) + ID3 SINE/ID 28 70 (9) 271 27.8 2.6 4.1 mouse 610485 610613 (305086) + PB1D10 SINE/Alu 14 90 (28) 30 0.0 0.0 0.0 mouse 610638 610667 (305032) + AT_rich Low_complexity 1 30 (0) 300 2.7 0.0 0.0 mouse 614178 614214 (301485) + (TG)n Simple_repeat 1 37 (0) 490 27.6 0.8 2.4 mouse 614218 614340 (301359) C RSINE1 SINE/B4 (37) 128 8 441 30.1 5.3 3.4 mouse 614355 614620 (301079) C L1MB3 LINE/L1 (17) 6168 5898 263 27.4 13.7 0.8 mouse 614746 614869 (300830) C L1MA5 LINE/L1 (574) 6778 6639 316 30.9 14.9 6.2 mouse 615009 615296 (300403) C L1MB3 LINE/L1 (538) 5637 5325 324 3.7 5.6 0.0 mouse 615312 615365 (300334) + (TCC)n Simple_repeat 1 57 (0) 516 27.6 6.0 3.9 mouse 615366 615590 (300109) C B4 SINE/B4 (46) 246 15 341 24.0 0.0 1.3 mouse 615527 615601 (300098) C ID4 SINE/ID (2) 77 4 * 385 14.4 32.4 2.7 mouse 615622 615732 (299967) C B2_Mm2 SINE/B2 (19) 190 47 1200 11.6 1.2 0.0 mouse 615803 615974 (299725) C B2_Mm1 SINE/B2 (35) 175 2 221 13.9 2.3 0.0 mouse 618459 618501 (297198) + (TTCA)n Simple_repeat 1 44 (0) 840 22.4 0.0 0.0 mouse 619796 620041 (295658) + (TCCA)n Simple_repeat 1 246 (0) 357 20.7 1.2 0.0 mouse 622703 622784 (292915) + MER45 DNA/AcHobo 80 162 (878) 347 4.1 2.0 0.0 mouse 623215 623263 (292436) + (TG)n Simple_repeat 2 51 (0) 333 26.5 1.6 5.4 mouse 629771 629955 (285744) + (TATG)n Simple_repeat 1 178 (0) 307 27.8 9.6 2.6 mouse 634992 635106 (280593) C MER2 DNA/MER2_type (220) 124 2 588 21.1 0.0 0.0 mouse 637691 637842 (277857) + (CA)n Simple_repeat 2 153 (0) 1025 24.2 9.2 2.6 mouse 638285 638557 (277142) C B4 SINE/B4 (0) 291 1 414 5.7 0.0 0.0 mouse 640434 640486 (275213) + (TA)n Simple_repeat 2 54 (0) 758 22.4 3.3 0.7 mouse 641171 641322 (274377) C B3A SINE/B2 (54) 156 1 826 28.4 10.6 1.3 mouse 641378 641831 (273868) + L1 LINE/L1 2504 2999 (3147) 333 0.0 0.0 0.0 mouse 642229 642265 (273434) + (CA)n Simple_repeat 1 37 (0) 240 18.6 7.1 7.1 mouse 642346 642415 (273284) + L1 LINE/L1 3612 3681 (2465) 716 30.3 11.4 6.7 mouse 642601 643231 (272468) C L1M4 LINE/L1 (2728) 3418 2758 562 28.6 2.7 1.4 mouse 643695 643800 (271899) + RSINE1 SINE/B4 17 127 (38) 504 4.8 0.0 0.0 mouse 643801 643863 (271836) + (CA)n Simple_repeat 1 63 (0) 562 28.6 2.7 1.4 mouse 643864 643903 (271796) + RSINE1 SINE/B4 127 165 (0) 6105 20.3 10.3 0.6 mouse 644583 646170 (269529) C L1 LINE/L1 (3100) 4318 2578 399 24.1 18.2 0.9 mouse 646235 646454 (269245) C L1M4 LINE/L1 (4822) 1328 1071 331 35.5 3.5 4.1 mouse 646561 646757 (268942) C B4 SINE/B4 (94) 197 2 232 35.8 0.0 0.0 mouse 647139 647233 (268466) C L1 LINE/L1 (1957) 4189 4095 354 28.2 9.3 4.7 mouse 647337 647821 (267878) C L1MCa LINE/L1 (1112) 5047 4541 329 34.6 8.5 0.9 mouse 647827 648037 (267662) C L1MCa LINE/L1 (1698) 4461 4235 356 29.9 12.9 0.0 mouse 648160 648353 (267346) C L1MCa LINE/L1 (2096) 4063 3845 915 16.2 9.9 2.1 mouse 648903 649093 (266606) C B2_Mm2 SINE/B2 (2) 207 2 393 2.2 0.0 0.0 mouse 649562 649607 (266092) + (TG)n Simple_repeat 2 47 (0) 279 30.4 6.5 4.2 mouse 651145 651404 (264295) C L1MCa LINE/L1 (2376) 3783 3518 233 31.0 0.0 4.2 mouse 652105 652175 (263524) C ID3 SINE/ID (10) 69 2 281 15.7 2.0 0.0 mouse 652270 652320 (263379) C L1M4 LINE/L1 (4965) 1194 1143 322 32.6 8.6 4.1 mouse 653588 653808 (261891) C L1MCa LINE/L1 (4449) 1710 1480 247 23.3 1.7 0.0 mouse 653842 653901 (261798) C B4A SINE/B4 (218) 74 14 941 26.7 9.0 10.6 mouse 654177 654989 (260710) C L1MCa LINE/L1 (5073) 1086 287 793 29.2 12.2 3.1 mouse 655342 656143 (259556) C L1M4c LINE/L1 (4533) 2005 1239 548 29.9 7.7 2.2 mouse 656377 656650 (259049) C L1M4c LINE/L1 (5028) 1131 843 25 6.5 0.0 0.0 mouse 657111 657156 (258543) + AT_rich Low_complexity 1 46 (0) 380 25.7 1.0 5.9 mouse 657312 657412 (258287) C RSINE1 SINE/B4 (68) 97 2 183 8.0 0.0 0.0 mouse 657919 657943 (257756) + (TTTG)n Simple_repeat 1 25 (0) 265 25.3 5.3 1.3 mouse 663317 663391 (252308) C ID4 SINE/ID (0) 79 2 247 23.5 0.0 0.0 mouse 663456 663506 (252193) C PB1 SINE/Alu (70) 59 9 332 31.7 10.1 3.0 mouse 663889 664087 (251612) C L1M4 LINE/L1 (1305) 4841 4629 331 26.3 0.0 0.0 mouse 664869 664951 (250748) + ID3 SINE/ID 1 65 (14) 499 29.9 1.6 2.1 mouse 665333 665519 (250180) C L1MD3 LINE/L1 (940) 6800 6615 400 28.8 4.9 7.5 mouse 666743 667009 (248690) + Lx8 LINE/L1 7165 7424 (70) 234 0.0 0.0 0.0 mouse 668695 668720 (246979) + (TTG)n Simple_repeat 2 27 (0) 327 29.4 5.6 5.0 mouse 674138 674297 (241402) C L1MC/D LINE/L1 (761) 5580 5420 825 29.0 4.3 0.9 mouse 674445 674768 (240931) C L1MC/D LINE/L1 (901) 5245 4911 355 21.0 2.6 4.5 mouse 676974 677145 (238554) + RLTR10 LTR/ERVK 116 468 (0) 231 3.6 0.0 0.0 mouse 677993 678020 (237679) + (TTTG)n Simple_repeat 2 29 (0) 709 12.2 4.3 8.6 mouse 678021 678159 (237540) C B1_MM SINE/Alu (10) 137 5 333 19.5 0.0 5.2 mouse 678450 678526 (237173) + ID4 SINE/ID 5 77 (2) 356 27.1 2.8 0.3 mouse 678538 678663 (237036) + PB1D10 SINE/Alu 9 79 (39) 23 0.0 0.0 0.0 mouse 680790 680812 (234887) + AT_rich Low_complexity 1 23 (0) 696 24.8 8.9 2.0 mouse 683734 683979 (231720) C B4A SINE/B4 (24) 268 6 198 0.0 0.0 0.0 mouse 684067 684088 (231611) + (T)n Simple_repeat 1 22 (0) 227 19.5 0.0 0.0 mouse 684825 684865 (230834) + ID5 SINE/ID 30 70 (13) 283 33.1 10.1 5.5 mouse 685908 686168 (229531) C L1MD1 LINE/L1 (8) 6216 5937 422 22.6 4.8 8.9 mouse 686169 686292 (229407) C PB1D9 SINE/Alu (0) 119 1 283 33.1 10.1 5.5 mouse 686293 686338 (229361) C L1MD1 LINE/L1 (287) 5937 5895 225 9.4 0.0 0.0 mouse 686650 686681 (229018) + (CATATA)n Simple_repeat 3 34 (0) 186 4.3 0.0 0.0 mouse 686685 686707 (228992) + (GA)n Simple_repeat 2 24 (0) 394 28.9 6.3 3.1 mouse 687570 687728 (227971) C MIR SINE/MIR (37) 225 62 247 38.7 2.1 0.7 mouse 687930 688071 (227628) + L2 LINE/L2 3170 3313 (0) 802 5.0 0.0 0.0 mouse 688190 688288 (227411) C B1_MM SINE/Alu (0) 147 49 712 16.1 0.8 2.3 mouse 688515 688644 (227055) + B3 SINE/B2 98 225 (0) 291 14.6 0.0 0.0 mouse 695763 695817 (219882) + (TCTCCC)n Simple_repeat 3 57 (0) 534 3.1 0.0 0.0 mouse 695853 695916 (219783) + (GA)n Simple_repeat 2 65 (0) 810 25.1 3.8 2.4 mouse 696842 697052 (218647) + B3 SINE/B2 1 214 (11) 304 27.3 9.1 0.0 mouse 697364 697484 (218215) + MER20 DNA/MER1_type 31 162 (57) 25 0.0 0.0 0.0 mouse 697931 697955 (217744) + AT_rich Low_complexity 1 25 (0) 1091 22.0 2.7 6.4 mouse 697965 698259 (217440) + B4A SINE/B4 2 285 (7) 375 33.5 10.3 2.5 mouse 698903 699144 (216555) C L1MD1 LINE/L1 (531) 5644 5384 594 29.3 3.5 0.4 mouse 700671 700950 (214749) C L1MD1 LINE/L1 (2198) 3948 3661 1432 12.9 0.5 0.5 mouse 701839 702062 (213637) C URR1B DNA/MER1_type (7) 228 5 234 17.4 0.0 0.0 mouse 703819 703864 (211835) + T-rich Low_complexity 1 46 (0) 809 18.2 0.0 2.7 mouse 704723 704870 (210829) C B1_MM SINE/Alu (1) 146 3 669 17.3 0.0 1.6 mouse 705141 705267 (210432) C B1_MM SINE/Alu (2) 145 21 234 0.0 0.0 0.0 mouse 706825 706850 (208849) + (CA)n Simple_repeat 1 26 (0) 255 16.4 0.0 0.0 mouse 706852 706912 (208787) + CT-rich Low_complexity 2 62 (0) 828 23.3 6.8 2.9 mouse 707546 707751 (207948) + B3 SINE/B2 1 214 (11) 794 16.3 7.7 7.7 mouse 707768 707976 (207723) + B3A SINE/B2 1 209 (1) 1082 27.0 3.1 2.1 mouse 709146 709434 (206265) + B4A SINE/B4 1 292 (0) 258 3.2 0.0 0.0 mouse 709447 709477 (206222) + (CA)n Simple_repeat 2 32 (0) 180 0.0 0.0 0.0 mouse 709477 709496 (206203) + (GA)n Simple_repeat 2 21 (0) * 452 32.3 2.4 3.2 mouse 709498 709710 (205989) + MLT1F1 LTR/MaLR 65 269 (273) 324 0.0 0.0 0.0 mouse 710709 710744 (204955) + (CA)n Simple_repeat 2 37 (0) 303 4.9 0.0 0.0 mouse 712413 712453 (203246) + (TG)n Simple_repeat 2 42 (0) 192 7.7 0.0 0.0 mouse 712462 712487 (203212) + (T)n Simple_repeat 1 26 (0) 1317 26.7 12.6 0.8 mouse 712496 712850 (202849) C L1MB8 LINE/L1 (8) 6167 5813 301 28.9 19.0 0.0 mouse 712851 713092 (202607) C L1MA5 LINE/L1 (535) 6817 5581 243 27.4 22.6 0.6 mouse 713064 713121 (202578) C L1MB8 LINE/L1 (666) 5509 5452 * 253 28.6 7.1 1.0 mouse 713122 713231 (202468) C L1MA5 LINE/L1 (878) 6474 5305 335 20.9 15.1 1.2 mouse 713270 713355 (202344) C L1MA5 LINE/L1 (873) 5273 5176 332 26.7 2.0 3.0 mouse 713357 713457 (202242) C PB1D10 SINE/Alu (1) 117 18 26 3.0 0.0 0.0 mouse 713487 713519 (202180) + AT_rich Low_complexity 1 33 (0) 367 23.6 12.2 4.7 mouse 713539 713686 (202013) C RSINE1 SINE/B4 (4) 161 3 368 24.5 1.0 2.0 mouse 713746 713847 (201852) C RMER16 LTR (84) 308 208 745 22.5 8.2 4.1 mouse 713854 714146 (201553) C L1MB8 LINE/L1 (980) 5166 4862 248 26.4 2.3 2.9 mouse 715459 715561 (200138) C ID3 SINE/ID (0) 83 2 261 13.9 0.0 0.0 mouse 717017 717059 (198640) + (A)n Simple_repeat 1 43 (0) 225 0.0 0.0 0.0 mouse 718192 718216 (197483) + (CA)n Simple_repeat 1 25 (0) 1119 6.8 0.0 1.4 mouse 718920 719067 (196632) + B1_MM SINE/Alu 1 146 (1) 718 24.8 1.9 0.6 mouse 721232 721392 (194307) C RSINE1 SINE/B4 (2) 163 1 454 32.9 2.1 0.0 mouse 724821 724963 (190736) C B4 SINE/B4 (0) 291 146 413 25.0 0.0 4.6 mouse 725011 725118 (190581) C B4 SINE/B4 (164) 127 25 345 28.6 0.0 0.0 mouse 726554 726623 (189076) C ID4 SINE/ID (2) 77 8 1133 6.8 0.0 0.7 mouse 727218 727365 (188334) + B1_MM SINE/Alu 1 147 (0) 198 10.3 0.0 0.0 mouse 727373 727401 (188298) + (GAAAA)n Simple_repeat 2 30 (0) 22 0.0 0.0 0.0 mouse 728411 728432 (187267) + AT_rich Low_complexity 1 22 (0) 504 0.0 0.0 0.0 mouse 730096 730151 (185548) + (CA)n Simple_repeat 2 57 (0) 244 25.0 6.6 0.0 mouse 731210 731285 (184414) + MIR SINE/MIR 88 168 (94) 243 0.0 0.0 0.0 mouse 731295 731321 (184378) + (CCCCAG)n Simple_repeat 5 31 (0) 269 32.2 1.1 0.0 mouse 731895 731984 (183715) + (CA)n Simple_repeat 1 91 (0) 347 19.2 0.0 5.5 mouse 733044 733116 (182583) + tRNA-Gly-GGC tRNA 3 71 (3) 763 18.8 0.0 1.3 mouse 733130 733278 (182421) + B1-F SINE/Alu 1 147 (0) 248 25.0 6.6 0.0 mouse 740014 740089 (175610) C MER47A DNA/MER2_type (0) 366 286 711 22.0 3.4 10.6 mouse 740096 740331 (175368) + B4 SINE/B4 4 222 (69) 216 9.7 0.0 0.0 mouse 740400 740430 (175269) + (CA)n Simple_repeat 2 32 (0) 315 24.9 11.2 6.1 mouse 742219 742415 (173284) + MTC LTR/MaLR 150 356 (65) 249 23.5 1.0 9.2 mouse 742424 742521 (173178) + MTE LTR/MaLR 288 377 (0) 786 12.2 0.8 0.8 mouse 743433 743555 (172144) + B1_MM SINE/Alu 1 123 (24) 382 32.6 10.1 3.9 mouse 743581 743838 (171861) C L1M4 LINE/L1 (2217) 3929 3656 312 18.0 3.3 0.0 mouse 744237 744297 (171402) + MER58 DNA/MER1_type 42 104 (237) 731 21.6 1.4 0.0 mouse 744757 744895 (170804) + B1-F SINE/Alu 6 146 (1) 292 28.7 6.1 6.7 mouse 744896 744912 (170787) + B4A SINE/B4 91 246 (46) 597 5.2 0.0 0.0 mouse 744940 745016 (170683) + (GGAA)n Simple_repeat 3 79 (0) 283 23.5 10.4 1.7 mouse 745758 745872 (169827) C L1MC3 LINE/L1 (197) 7543 7419 225 0.0 0.0 0.0 mouse 746870 746894 (168805) + (A)n Simple_repeat 1 25 (0) 205 20.0 0.0 0.0 mouse 749970 750009 (165690) + T-rich Low_complexity 1 40 (0) 461 20.0 15.8 4.2 mouse 750409 750528 (165171) C B1-F SINE/Alu (13) 134 1 1101 27.5 7.8 3.9 mouse 751071 751532 (164167) + Tigger7 DNA/MER2_type 1 480 (253) 255 36.0 1.1 0.0 mouse 752107 752195 (163504) C PB1D10 SINE/Alu (24) 94 19 250 24.3 4.3 1.4 mouse 752213 752282 (163417) C ID3 SINE/ID (7) 72 1 * 477 25.7 0.0 0.0 mouse 752283 752384 (163315) C MLT1A1 LTR/MaLR (209) 156 55 740 31.6 9.8 2.2 mouse 753158 753574 (162125) C L1MB7 LINE/L1 (89) 6086 5638 400 27.1 9.3 0.0 mouse 753984 754090 (161609) C PB1D7 SINE/Alu (4) 117 1 213 3.9 0.0 0.0 mouse 754156 754181 (161518) + (TG)n Simple_repeat 1 26 (0) 3945 15.7 0.9 1.0 mouse 754785 755557 (160142) + MERVL LTR/ERVL 1042 1900 (3803) 360 5.7 0.0 0.0 mouse 755580 755632 (160067) C ORR1A3 LTR/MaLR (274) 53 1 732 24.1 1.3 0.6 mouse 755644 755798 (159901) C B3 SINE/B2 (15) 210 55 567 13.0 7.3 5.7 mouse 755799 755921 (159778) + B1_MM SINE/Alu 1 125 (22) 330 22.1 0.0 1.5 mouse 755929 755996 (159703) C B3 SINE/B2 (158) 67 1 225 31.2 1.3 0.0 mouse 756211 756287 (159412) C PB1D10 SINE/Alu (37) 81 4 378 15.3 5.9 2.4 mouse 756383 756467 (159232) C PB1D9 SINE/Alu (0) 119 32 470 27.1 9.8 0.0 mouse 756517 756649 (159050) C RSINE1 SINE/B4 (17) 148 3 201 24.5 0.0 0.0 mouse 756780 756832 (158867) + T-rich Low_complexity 4 56 (0) 551 20.5 3.8 4.3 mouse 756841 757025 (158674) C L1M4 LINE/L1 (2173) 3973 3790 435 31.1 3.8 3.5 mouse 757330 757644 (158055) C L1M4 LINE/L1 (2732) 3414 3099 441 0.0 0.0 0.0 mouse 757647 757695 (158004) + (TG)n Simple_repeat 2 50 (0) 21 3.6 0.0 0.0 mouse 757815 757842 (157857) + AT_rich Low_complexity 1 28 (0) 719 22.9 0.0 4.8 mouse 757846 758011 (157688) C RSINE1 SINE/B4 (0) 165 8 1196 4.1 0.0 0.0 mouse 758035 758181 (157518) + B1_MM SINE/Alu 1 147 (0) 506 23.8 12.3 1.5 mouse 758287 758547 (157152) C L1M4 LINE/L1 (3160) 2986 2698 416 23.7 1.9 6.0 mouse 758668 758873 (156826) C B4 SINE/B4 (31) 260 26 205 16.7 0.0 0.0 mouse 759213 759248 (156451) + CT-rich Low_complexity 2 37 (0) 324 28.1 4.7 0.0 mouse 759305 759432 (156267) C B1-F SINE/Alu (13) 134 1 243 0.0 0.0 0.0 mouse 759773 759799 (155900) + (T)n Simple_repeat 1 27 (0) 184 17.0 3.8 1.9 mouse 760119 760171 (155528) + CT-rich Low_complexity 4 57 (0) 354 21.4 2.7 0.0 mouse 760173 760254 (155445) C ID4 SINE/ID (4) 75 1 452 24.8 7.5 1.5 mouse 760262 760394 (155305) C B1_MM SINE/Alu (6) 141 1 759 2.2 0.0 0.0 mouse 760404 760492 (155207) + (TTC)n Simple_repeat 2 90 (0) 513 25.4 6.6 6.1 mouse 760494 760706 (154993) C B3 SINE/B2 (7) 218 5 273 21.1 3.9 0.0 mouse 760765 760816 (154883) C PB1 SINE/Alu (55) 74 21 381 30.6 12.3 1.2 mouse 760835 761086 (154613) C MLT1F LTR/MaLR (2) 540 261 180 0.0 0.0 0.0 mouse 764560 764579 (151120) + (CCTG)n Simple_repeat 2 21 (0) 842 16.5 0.0 0.0 mouse 764960 765092 (150607) C B1_MM SINE/Alu (7) 140 8 288 0.0 0.0 0.0 mouse 770809 770840 (144859) + (TC)n Simple_repeat 1 32 (0) 361 33.5 3.3 0.6 mouse 770842 771023 (144676) C L1M4 LINE/L1 (2590) 3556 3370 355 33.5 10.2 1.0 mouse 771115 771311 (144388) C L1M4 LINE/L1 (2901) 3245 3031 207 0.0 0.0 0.0 mouse 771327 771349 (144350) + (T)n Simple_repeat 1 23 (0) 331 37.2 4.4 2.8 mouse 771640 771889 (143810) C L1M4 LINE/L1 (3328) 2818 2565 1402 22.0 3.8 2.5 mouse 771897 772589 (143110) C L1ME LINE/L1 (541) 5622 4940 1023 24.7 4.2 2.8 mouse 772635 772921 (142778) C B4 SINE/B4 (0) 291 1 687 18.7 2.0 4.0 mouse 772943 773092 (142607) + B1-F SINE/Alu 1 147 (0) 230 22.7 8.3 10.6 mouse 773291 773422 (142277) + PB1 SINE/Alu 1 129 (0) 284 31.0 16.2 0.0 mouse 773427 773623 (142076) C L1ME LINE/L1 (1295) 4851 4623 243 21.6 22.6 0.0 mouse 773801 773902 (141797) C B1_MM SINE/Alu (0) 147 23 539 31.5 9.7 6.4 mouse 774008 774690 (141009) C L1ME LINE/L1 (1736) 4410 3706 238 10.6 4.3 0.0 mouse 774695 774741 (140958) + (CA)n Simple_repeat 2 50 (0) 433 24.8 3.8 5.3 mouse 774767 774899 (140800) C B1-F SINE/Alu (16) 131 1 447 14.9 0.0 0.0 mouse 774955 775061 (140638) + (TC)n Simple_repeat 2 108 (0) 584 29.6 2.8 1.6 mouse 775606 775852 (139847) C Charlie5 DNA/MER1_type (75) 2537 2288 262 27.1 0.0 0.0 mouse 775866 775924 (139775) C PB1D7 SINE/Alu (0) 121 63 379 29.4 0.0 2.5 mouse 775926 776044 (139655) C B1_MM SINE/Alu (30) 117 2 21 0.0 0.0 0.0 mouse 776105 776125 (139574) + AT_rich Low_complexity 1 21 (0) 1082 24.5 11.5 0.9 mouse 782616 782954 (132745) C MTE LTR/MaLR (2) 375 1 210 27.8 3.3 0.0 mouse 786516 786605 (129094) + (TG)n Simple_repeat 1 93 (0) 181 32.8 1.7 0.0 mouse 786916 786973 (128726) C MIR SINE/MIR (114) 148 90 636 33.1 3.1 3.1 mouse 787267 787619 (128080) C MTE LTR/MaLR (22) 355 3 498 10.8 0.0 0.0 mouse 788372 788445 (127254) + (TAGA)n Simple_repeat 1 74 (0) 393 37.5 0.7 0.0 mouse 790142 790285 (125414) + MER58A DNA/MER1_type 2 146 (0) 474 27.3 1.1 1.1 mouse 794502 794784 (120915) + (TGGA)n Simple_repeat 1 283 (0) 245 25.3 1.3 1.3 mouse 795188 795266 (120433) + (TG)n Simple_repeat 1 79 (0) 1029 26.5 3.5 0.8 mouse 795269 795528 (120171) C B4 SINE/B4 (0) 291 25 401 32.6 0.7 0.7 mouse 795828 795971 (119728) C HAL1 LINE/L1 (866) 1641 1498 203 22.6 5.7 0.0 mouse 797125 797177 (118522) + MIR SINE/MIR 106 161 (101) 221 29.4 5.2 2.9 mouse 798323 798458 (117241) + L2 LINE/L2 2626 2764 (550) 440 19.3 2.8 2.8 mouse 799504 799679 (116020) + (TGGA)n Simple_repeat 3 178 (0) 196 10.9 2.2 4.3 mouse 799757 799802 (115897) + (TAGA)n Simple_repeat 1 45 (0) 1153 6.2 0.0 0.0 mouse 801029 801173 (114526) C B1_MM SINE/Alu (2) 145 1 878 23.4 1.3 9.2 mouse 803553 803856 (111843) + B4 SINE/B4 4 283 (8) 377 29.5 2.9 0.0 mouse 805414 805518 (110181) + PB1D10 SINE/Alu 2 109 (9) 309 25.4 7.0 0.0 mouse 806952 807065 (108634) + MLT1D LTR/MaLR 250 371 (134) 249 3.3 0.0 0.0 mouse 807252 807281 (108418) + (TG)n Simple_repeat 1 30 (0) 23 0.0 0.0 0.0 mouse 807775 807797 (107902) + AT_rich Low_complexity 1 23 (0) 390 27.9 1.2 8.7 mouse 807875 808035 (107664) + B4 SINE/B4 12 160 (131) 429 10.9 0.0 0.0 mouse 808063 808126 (107573) + (CA)n Simple_repeat 1 64 (0) 552 26.8 7.7 1.7 mouse 808149 808336 (107363) + B3A SINE/B2 6 182 (28) 37 6.2 0.0 0.0 mouse 808374 808438 (107261) + AT_rich Low_complexity 1 65 (0) 233 14.6 7.3 5.5 mouse 811332 811386 (104313) C MLT1J LTR/MaLR (216) 295 240 205 28.8 1.7 0.0 mouse 811727 811785 (103914) C L2 LINE/L2 (954) 2360 2301 335 26.1 18.2 5.5 mouse 812560 812793 (102906) + HAL1 LINE/L1 1396 1680 (827) 453 8.1 0.0 0.0 mouse 812794 812855 (102844) + (TA)n Simple_repeat 2 63 (0) 335 26.1 18.2 5.5 mouse 812856 812927 (102772) + HAL1 LINE/L1 1680 1741 (766) 356 25.3 1.3 1.0 mouse 813134 813240 (102459) + ID3 SINE/ID 2 72 (7) 930 19.9 1.4 2.8 mouse 813251 813461 (102238) + B3A SINE/B2 1 208 (2) 445 29.2 0.0 0.0 mouse 813483 813571 (102128) + RSINE1 SINE/B4 9 97 (68) 340 23.1 16.2 4.6 mouse 813721 813893 (101806) + HAL1 LINE/L1 2221 2413 (94) 1139 7.6 0.0 0.7 mouse 819032 819176 (96523) + B1_MM SINE/Alu 3 146 (1) 34 0.0 0.0 0.0 mouse 819177 819210 (96489) + AT_rich Low_complexity 1 34 (0) 293 25.0 2.5 0.0 mouse 820550 820629 (95070) + B1-F SINE/Alu 25 106 (41) 228 19.5 0.0 0.0 mouse 821428 821468 (94231) C L2 LINE/L2 (349) 2964 2924 336 2.4 0.0 0.0 mouse 821717 821757 (93942) + (TG)n Simple_repeat 2 42 (0) 412 19.6 10.7 4.5 mouse 822096 822207 (93492) C PB1D9 SINE/Alu (0) 119 1 462 11.4 0.0 0.0 mouse 831126 831195 (84504) + (CATA)n Simple_repeat 4 73 (0) 501 3.2 0.0 0.0 mouse 833063 833125 (82574) + (CA)n Simple_repeat 2 64 (0) 461 22.1 1.5 7.8 mouse 836689 836888 (78811) C B4 SINE/B4 (4) 287 2 1157 29.0 3.3 5.4 mouse 836988 837597 (78102) C L1MA5 LINE/L1 (274) 7078 6482 428 20.6 24.8 4.2 mouse 837657 837817 (77882) C B4 SINE/B4 (85) 206 2 297 23.0 1.5 15.6 mouse 838312 838446 (77253) C B4 SINE/B4 (131) 160 45 343 31.9 2.2 0.0 mouse 839796 839930 (75769) + (TGGA)n Simple_repeat 4 141 (0) 339 19.1 0.0 0.0 mouse 839961 840028 (75671) + (TGGA)n Simple_repeat 4 71 (0) 234 0.0 0.0 0.0 mouse 840987 841012 (74687) + (TTTG)n Simple_repeat 1 26 (0) 333 0.0 0.0 0.0 mouse 841013 841049 (74650) + (TTCA)n Simple_repeat 4 40 (0) 316 30.3 0.0 0.0 mouse 841067 841142 (74557) C B4A SINE/B4 (3) 289 214 247 33.0 0.9 1.8 mouse 842000 842111 (73588) C B4A SINE/B4 (63) 229 119 423 31.2 0.8 0.0 mouse 842291 842418 (73281) + B1-F SINE/Alu 18 146 (1) 296 23.3 1.9 4.8 mouse 842546 842648 (73051) + MER47A DNA/MER2_type 73 172 (194) 330 29.9 3.7 2.2 mouse 842674 842807 (72892) + B1-F SINE/Alu 10 145 (2) 276 33.9 1.5 5.6 mouse 842812 843006 (72693) + MER47A DNA/MER2_type 179 365 (1) 252 25.8 1.6 0.0 mouse 843856 843917 (71782) + GA-rich Low_complexity 1 63 (0) 471 31.9 4.0 2.6 mouse 844179 844404 (71295) + MLT1B LTR/MaLR 133 361 (29) 253 12.9 4.7 1.2 mouse 845488 845572 (70127) + CT-rich Low_complexity 1 88 (0) 230 23.7 1.0 0.0 mouse 846659 846755 (68944) + (TGGA)n Simple_repeat 4 101 (0) 480 24.6 0.9 0.9 mouse 847885 847994 (67705) C PB1D7 SINE/Alu (2) 119 10 343 26.9 11.2 0.4 mouse 848007 848123 (67576) C PB1D7 SINE/Alu (18) 103 7 208 20.4 4.5 0.0 mouse 849255 849298 (66401) + CT-rich Low_complexity 3 48 (0) 631 22.9 3.9 2.0 mouse 849326 849478 (66221) C RSINE1 SINE/B4 (8) 157 2 434 13.2 0.0 0.0 mouse 849479 849546 (66153) + (TCC)n Simple_repeat 3 70 (0) 341 22.8 4.1 0.0 mouse 849550 849631 (66068) C ID5 SINE/ID (9) 74 1 362 27.5 0.0 0.0 mouse 849949 850028 (65671) C ID5 SINE/ID (0) 83 4 265 30.8 3.7 0.0 mouse 850391 850497 (65202) C B1-F SINE/Alu (1) 146 36 315 12.2 0.0 0.0 mouse 851038 851086 (64613) + (A)n Simple_repeat 1 49 (0) 489 16.5 1.9 3.9 mouse 851300 851402 (64297) + RSINE1 SINE/B4 31 131 (34) 482 7.0 1.4 0.0 mouse 851404 851474 (64225) + (CA)n Simple_repeat 1 72 (0) 560 29.6 2.8 0.7 mouse 851511 851652 (64047) + RSINE1 SINE/B4 17 161 (4) 22 3.5 0.0 0.0 mouse 851653 851681 (64018) + AT_rich Low_complexity 1 29 (0) 367 24.4 8.9 3.7 mouse 851978 852112 (63587) C B1_MM SINE/Alu (0) 147 6 * 402 26.4 4.7 1.6 mouse 852064 852192 (63507) C B4A SINE/B4 (151) 141 9 201 28.2 1.4 1.4 mouse 852355 852425 (63274) + (TATATG)n Simple_repeat 2 72 (0) 567 27.3 10.0 6.3 mouse 852448 852718 (62981) C B4A SINE/B4 (2) 290 10 1137 6.1 0.0 1.4 mouse 853018 853028 (62671) C B1_MM SINE/Alu (0) 147 137 666 0.0 0.0 0.0 mouse 853029 853102 (62597) + (GTTTG)n Simple_repeat 2 75 (0) 1137 6.1 0.0 1.4 mouse 853103 853237 (62462) C B1_MM SINE/Alu (10) 137 3 423 0.0 0.0 0.0 mouse 853363 853409 (62290) + (CA)n Simple_repeat 2 48 (0) 384 5.9 0.0 0.0 mouse 855240 855290 (60409) + (TG)n Simple_repeat 2 52 (0) 535 29.1 0.0 0.0 mouse 855307 855423 (60276) C RSINE1 SINE/B4 (45) 120 4 313 33.8 5.2 0.0 mouse 855498 855651 (60048) + L1MC1 LINE/L1 5516 5677 (653) 369 27.1 0.9 1.9 mouse 855915 856021 (59678) + L1MC1 LINE/L1 6063 6168 (164) 300 32.0 6.7 0.7 mouse 856056 856205 (59494) + MIR SINE/MIR 29 187 (75) 21 7.1 0.0 0.0 mouse 859607 859648 (56051) + GC_rich Low_complexity 1 42 (0) 212 22.7 1.0 7.2 mouse 859941 860037 (55662) + (CGGGG)n Simple_repeat 5 95 (0) 329 30.1 0.0 0.0 mouse 860160 860315 (55384) + CT-rich Low_complexity 2 157 (0) 246 35.5 0.0 0.0 mouse 860421 860527 (55172) + (TTCGGG)n Simple_repeat 3 109 (0) 222 22.6 0.0 3.8 mouse 861020 861072 (54627) + G-rich Low_complexity 2 52 (0) 23 0.0 0.0 0.0 mouse 861467 861489 (54210) + GC_rich Low_complexity 1 23 (0) 207 16.7 0.0 0.0 mouse 861596 861631 (54068) + C-rich Low_complexity 1 36 (0) 23 0.0 0.0 0.0 mouse 862247 862269 (53430) + GC_rich Low_complexity 1 23 (0) 261 17.9 2.4 11.9 mouse 863799 863882 (51817) + ID4 SINE/ID 4 79 (0) 212 19.4 0.0 0.0 mouse 863884 863919 (51780) + (TAAA)n Simple_repeat 2 37 (0) 192 27.6 1.7 0.0 mouse 864938 864995 (50704) C MIR SINE/MIR (136) 126 68 23 3.3 0.0 0.0 mouse 865506 865535 (50164) + GC_rich Low_complexity 1 30 (0) 225 9.4 0.0 0.0 mouse 866024 866055 (49644) + (CA)n Simple_repeat 1 32 (0) * 478 0.0 3.2 0.0 mouse 866055 866116 (49583) + (GA)n Simple_repeat 2 65 (0) 295 33.3 2.9 0.7 mouse 866147 866284 (49415) C B1-F SINE/Alu (5) 142 2 * 306 27.8 15.1 0.0 mouse 866285 866353 (49346) C B4A SINE/B4 (203) 89 2 383 29.2 0.0 0.0 mouse 867133 867228 (48471) + PB1D9 SINE/Alu 6 101 (18) 366 12.3 0.0 0.0 mouse 867233 867289 (48410) + (GGGAGA)n Simple_repeat 5 61 (0) 396 0.0 0.0 0.0 mouse 867390 867433 (48266) + (CA)n Simple_repeat 2 45 (0) 193 27.5 1.4 1.4 mouse 867894 867962 (47737) + MIR SINE/MIR 71 139 (123) 216 34.3 1.9 1.9 mouse 868421 868525 (47174) C MIR SINE/MIR (67) 195 91 316 27.4 10.8 0.0 mouse 868610 868711 (46988) C PB1D7 SINE/Alu (7) 114 2 320 28.2 6.9 8.1 mouse 869249 869278 (46421) + B4 SINE/B4 63 92 (199) 646 22.6 2.3 1.5 mouse 869279 869411 (46288) + B1-F SINE/Alu 11 144 (3) 320 28.2 6.9 8.1 mouse 869412 869422 (46277) + B4 SINE/B4 92 234 (57) 401 19.6 14.1 0.0 mouse 869454 869545 (46154) + PB1D7 SINE/Alu 17 121 (0) 659 20.9 4.8 8.6 mouse 869551 869760 (45939) + B3A SINE/B2 2 203 (7) 186 13.3 0.0 0.0 mouse 871502 871531 (44168) + (TCC)n Simple_repeat 3 32 (0) 285 2.9 0.0 0.0 mouse 872041 872074 (43625) + (TC)n Simple_repeat 2 35 (0) 261 0.0 0.0 0.0 mouse 872074 872102 (43597) + (TA)n Simple_repeat 2 30 (0) * 1159 11.0 0.0 2.3 mouse 872106 872278 (43421) C B2_Mm2 SINE/B2 (39) 170 2 194 31.8 7.1 1.2 mouse 874670 874754 (40945) C L2 LINE/L2 (816) 2498 2409 793 24.6 6.8 0.5 mouse 874757 874947 (40752) + B3 SINE/B2 6 208 (17) 366 8.0 0.0 0.0 mouse 875408 875457 (40242) + (CA)n Simple_repeat 1 50 (0) 1147 6.7 0.0 2.0 mouse 876546 876695 (39004) + B1_MM SINE/Alu 1 147 (0) 361 18.8 3.1 7.3 mouse 878145 878336 (37363) + RMER17C LTR 97 280 (134) 660 17.5 0.0 3.3 mouse 878701 878820 (36879) C B1_MM SINE/Alu (14) 133 18 386 27.3 14.1 0.8 mouse 878724 878844 (36855) C B4 SINE/B4 (87) 204 68 * 212 25.8 5.4 1.1 mouse 881286 881378 (34321) C L2 LINE/L2 (720) 2594 2498 916 14.5 11.0 8.4 mouse 881510 881736 (33963) + URR1A DNA/MER1_type 1 233 (3) 21 0.0 0.0 0.0 mouse 883367 883387 (32312) + AT_rich Low_complexity 1 21 (0) 243 0.0 0.0 0.0 mouse 883388 883414 (32285) + (TTTG)n Simple_repeat 2 28 (0) 288 14.8 0.0 3.7 mouse 883415 883468 (32231) C PB1D9 SINE/Alu (27) 92 41 558 20.2 0.0 1.8 mouse 883487 883582 (32117) + PB1D7 SINE/Alu 12 107 (14) 552 6.8 0.0 0.0 mouse 883583 883655 (32044) + (GAAAA)n Simple_repeat 2 74 (0) 558 20.2 0.0 1.8 mouse 883656 883667 (32032) + PB1D7 SINE/Alu 107 118 (3) 442 21.2 7.7 2.2 mouse 883671 883805 (31894) + B3 SINE/B2 48 190 (19) 844 17.9 1.4 0.0 mouse 883814 883953 (31746) + B1-F SINE/Alu 6 147 (0) 195 20.0 2.9 1.4 mouse 883954 884023 (31676) + GA-rich Low_complexity 2 72 (0) 254 32.9 0.0 2.4 mouse 884264 884348 (31351) + B1-F SINE/Alu 38 120 (27) 441 0.0 0.0 0.0 mouse 884364 884412 (31287) + (TG)n Simple_repeat 1 49 (0) 349 21.8 11.5 0.0 mouse 884433 884510 (31189) C PB1D9 SINE/Alu (0) 119 33 848 24.7 4.6 0.0 mouse 884511 884704 (30995) C B3A SINE/B2 (7) 203 1 762 8.4 0.0 0.0 mouse 884740 884846 (30853) + (GA)n Simple_repeat 1 107 (0) 375 27.0 0.0 2.2 mouse 884974 885062 (30637) C RSINE1 SINE/B4 (21) 144 58 353 22.2 5.6 0.0 mouse 885119 885190 (30509) C ID4 SINE/ID (3) 76 1 1176 10.3 0.6 1.1 mouse 885517 885690 (30009) + B2_Mm2 SINE/B2 2 174 (35) 1029 11.9 0.0 0.0 mouse 885698 885857 (29842) + (GGA)n Simple_repeat 3 162 (0) 295 24.3 1.4 1.4 mouse 890399 890468 (25231) + ID2 SINE/ID 4 73 (6) 373 26.8 0.7 2.7 mouse 890477 890611 (25088) + PB1D10 SINE/Alu 2 93 (25) 342 6.7 0.0 0.0 mouse 890612 890656 (25043) + (TGAA)n Simple_repeat 3 47 (0) 327 7.8 0.0 0.0 mouse 891137 891187 (24512) + (TTTG)n Simple_repeat 2 52 (0) 847 10.2 3.1 2.4 mouse 891194 891320 (24379) C B1_MM SINE/Alu (19) 128 1 258 10.5 0.0 0.0 mouse 892281 892318 (23381) + (T)n Simple_repeat 1 38 (0) 502 17.8 0.0 0.0 mouse 893019 893108 (22591) + URR1B DNA/MER1_type 6 95 (140) * 888 15.8 0.0 0.0 mouse 893108 893246 (22453) + B1_MM SINE/Alu 9 147 (0) 828 17.0 0.0 3.8 mouse 893255 893413 (22286) + URR1B DNA/MER1_type 78 230 (5) 450 0.0 0.0 0.0 mouse 893562 893611 (22088) + (CA)n Simple_repeat 1 50 (0) 717 19.4 0.0 4.9 mouse 895521 895664 (20035) + B1-F SINE/Alu 9 145 (2) 198 14.3 0.0 0.0 mouse 895665 895699 (20000) + (GGA)n Simple_repeat 1 35 (0) 354 12.3 4.6 0.0 mouse 895793 895857 (19842) + B1_MM SINE/Alu 76 143 (4) 277 2.1 2.1 4.3 mouse 895863 895909 (19790) + (CAAAAA)n Simple_repeat 2 47 (0) 270 0.0 0.0 0.0 mouse 895940 895969 (19730) + (CAAA)n Simple_repeat 2 31 (0) 1022 12.0 0.0 2.7 mouse 895970 896119 (19580) + B1_MM SINE/Alu 1 146 (1) 288 0.0 0.0 0.0 mouse 896123 896154 (19545) + (CAA)n Simple_repeat 2 33 (0) 1362 8.4 6.3 2.1 mouse 897255 897445 (18254) C B2_Mm2 SINE/B2 (9) 200 2 246 9.5 0.0 0.0 mouse 899314 899355 (16344) + (CGG)n Simple_repeat 2 43 (0) 248 21.7 0.0 1.7 mouse 899555 899614 (16085) + C-rich Low_complexity 3 61 (0) 688 20.8 10.9 2.7 mouse 899920 900102 (15597) + B3A SINE/B2 1 198 (12) 554 24.4 6.5 9.0 mouse 900106 900306 (15393) + B3 SINE/B2 1 197 (14) 506 28.2 0.0 2.8 mouse 900323 900464 (15235) + RSINE1 SINE/B4 3 140 (25) 324 0.0 0.0 0.0 mouse 900468 900503 (15196) + (CA)n Simple_repeat 2 37 (0) 234 17.2 20.7 0.0 mouse 901317 901374 (14325) C B4A SINE/B4 (140) 152 83 357 33.5 7.9 0.0 mouse 901485 901636 (14063) C RSINE1 SINE/B4 (0) 165 2 188 0.0 0.0 6.9 mouse 901674 901691 (14008) + (CAA)n Simple_repeat 2 19 (9) 1611 6.5 1.0 0.0 mouse 901692 901891 (13808) C B2_Mm1 SINE/B2 (8) 202 1 188 0.0 0.0 6.9 mouse 901892 901901 (13798) + (CAA)n Simple_repeat 19 28 (0) 973 20.3 5.1 1.5 mouse 901916 902112 (13587) + B3 SINE/B2 3 206 (19) 31 4.4 0.0 0.0 mouse 902118 902162 (13537) + AT_rich Low_complexity 1 45 (0) 263 19.2 2.7 6.8 mouse 902173 902245 (13454) C ID5 SINE/ID (4) 79 10 366 24.8 9.1 1.6 mouse 902333 902453 (13246) C B4A SINE/B4 (147) 145 16 302 20.0 4.0 4.0 mouse 902391 902465 (13234) C ID4 SINE/ID (0) 79 5 * 648 22.1 4.2 7.4 mouse 902770 902959 (12740) + B3 SINE/B2 3 186 (39) 658 26.6 0.0 4.0 mouse 902980 903152 (12547) C B3 SINE/B2 (12) 213 48 * 1090 11.6 4.6 0.0 mouse 903147 903319 (12380) C B2_Mm2 SINE/B2 (28) 181 1 593 17.2 1.8 1.0 mouse 903326 903446 (12253) C B1-F SINE/Alu (39) 108 5 485 25.3 2.4 7.7 mouse 903479 903648 (12051) + RSINE1 SINE/B4 2 162 (3) 258 22.6 0.0 0.0 mouse 904748 904758 (10941) + B4 SINE/B4 76 128 (163) 310 9.5 0.0 0.0 mouse 904759 904800 (10899) + B1_MM SINE/Alu 1 42 (105) 530 28.1 2.9 0.0 mouse 904915 905053 (10646) C B3 SINE/B2 (24) 201 59 210 7.1 0.0 0.0 mouse 905662 905689 (10010) + (CACAG)n Simple_repeat 5 32 (0) 241 27.0 5.4 1.4 mouse 907084 907157 (8542) + PB1D7 SINE/Alu 42 118 (3) 309 33.3 0.0 0.0 mouse 907158 907232 (8467) + ID3 SINE/ID 3 77 (2) 334 24.4 0.0 2.3 mouse 907245 907330 (8369) C PB1D9 SINE/Alu (7) 112 29 521 21.9 3.9 3.1 mouse 907344 907471 (8228) C B1_MM SINE/Alu (2) 145 17 * 663 24.0 5.7 5.2 mouse 907465 907656 (8043) C B3 SINE/B2 (31) 194 2 888 12.2 0.7 4.0 mouse 907692 907830 (7869) + B1_MM SINE/Alu 5 140 (7) 204 4.0 0.0 0.0 mouse 907831 907855 (7844) + (CCA)n Simple_repeat 1 25 (0) 737 21.1 6.1 0.7 mouse 908076 908222 (7477) C B3 SINE/B2 (68) 157 3 923 26.7 3.0 2.7 mouse 908328 908754 (6945) + MT2A LTR/MaLR 8 586 (14) 446 29.3 1.9 6.5 mouse 912272 912486 (3213) + B3A SINE/B2 5 209 (1) 22 0.0 0.0 0.0 mouse 912643 912664 (3035) + AT_rich Low_complexity 1 22 (0) 1036 12.6 3.6 1.2 mouse 912710 912876 (2823) C B2_Mm2 SINE/B2 (37) 172 2 1031 18.2 0.0 0.0 mouse 913378 913558 (2141) + MTC LTR/MaLR 38 218 (203)