%define type %name LocusLink %color Blue %define type %name PubMed %color Red %define type %name NCBI %color Green %define type %name Regulatory %color Orange %define type %name TIGR %color Gray %define annotation %type LocusLink %range 64096 67765 %label Evx2 %url http://www.ncbi.nlm.nih.gov/LocusLink/list.cgi?Q=evx2&ORG=&V=0 %define annotation %type LocusLink %range 76904 78719 %label HOXD13 %url http://www.ncbi.nlm.nih.gov/LocusLink/list.cgi?Q=HOXD13&ORG=&V=0 %define annotation %type LocusLink %range 83791 84749 %label HOXD12 %url http://www.ncbi.nlm.nih.gov/LocusLink/list.cgi?Q=HOXD12&ORG=&V=0 %define annotation %type Regulatory %range 82370 82596 %label Region XI %summary Genetic analysis of a Hoxd-12 regulatory element reveals global versus local modes of controls in the HoxD complex. Herault Y, Beckers J, Kondo T, Fraudeau N, Duboule D. Development. 1998 May;125(9):1669-77. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=9521905&dopt=Abstract %summary full text %url http://www.biologists.com/Development/125/09/dev1271.html %define annotation %type Regulatory %range 88252 88478 %label Region X (LE1) %summary Transgenic analysis of a potential Hoxd-11 limb regulatory element present in tetrapods and fish. Beckers J, Gerard M, Duboule D. Dev Biol. 1996 Dec 15;180(2):543-53. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8954726&dopt=Abstract %summary full text %url http://www.idealibrary.com/links/citation/0012-1606/180/543 %define annotation %type LocusLink %range 91345 93131 %label HOXD11 %url http://www.ncbi.nlm.nih.gov/LocusLink/list.cgi?Q=HOXD11&ORG=&V=0 %define annotation %type Regulatory %range 90836 91017 %label region I %summary corresponds to mouse element. Structure and activity of regulatory elements involved in the activation of the Hoxd-11 gene during late gastrulation. Gerard M, Duboule D, Zakany J. EMBO J. 1993 Sep;12(9):3539-50. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7902810&dopt=Abstract %define annotation %type Regulatory %range 91142 91286 %label region II %summary corresponds to mouse element. Structure and activity of regulatory elements involved in the activation of the Hoxd-11 gene during late gastrulation. Gerard M, Duboule D, Zakany J. EMBO J. 1993 Sep;12(9):3539-50. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7902810&dopt=Abstract %define annotation %type Regulatory %range 91345 92060 %label region III %summary corresponds to mouse element. Structure and activity of regulatory elements involved in the activation of the Hoxd-11 gene during late gastrulation. Gerard M, Duboule D, Zakany J. EMBO J. 1993 Sep;12(9):3539-50. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7902810&dopt=Abstract %define annotation %type Regulatory %range 92210 92342 %label region IV %summary corresponds to mouse element. Structure and activity of regulatory elements involved in the activation of the Hoxd-11 gene during late gastrulation. Gerard M, Duboule D, Zakany J. EMBO J. 1993 Sep;12(9):3539-50. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7902810&dopt=Abstract %define annotation %type Regulatory %range 92896 93131 %label region V %summary corresponds to mouse element. Structure and activity of regulatory elements involved in the activation of the Hoxd-11 gene during late gastrulation. Gerard M, Duboule D, Zakany J. EMBO J. 1993 Sep;12(9):3539-50. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7902810&dopt=Abstract %define annotation %type Regulatory %range 93311 93400 %label region VI %summary corresponds to mouse element. Structure and activity of regulatory elements involved in the activation of the Hoxd-11 gene during late gastrulation. Gerard M, Duboule D, Zakany J. EMBO J. 1993 Sep;12(9):3539-50. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7902810&dopt=Abstract %define annotation %type Regulatory %range 93481 93657 %label region VII %summary corresponds to mouse element. Structure and activity of regulatory elements involved in the activation of the Hoxd-11 gene during late gastrulation. Gerard M, Duboule D, Zakany J. EMBO J. 1993 Sep;12(9):3539-50. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7902810&dopt=Abstract %define annotation %type Regulatory %range 94266 94413 %label region VIII %summary corresponds to mouse element. Structure and activity of regulatory elements involved in the activation of the Hoxd-11 gene during late gastrulation. Gerard M, Duboule D, Zakany J. EMBO J. 1993 Sep;12(9):3539-50. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7902810&dopt=Abstract %define annotation %type Regulatory %range 94396 94686 %label region IX %summary corresponds to mouse element. Structure and activity of regulatory elements involved in the activation of the Hoxd-11 gene during late gastrulation. Gerard M, Duboule D, Zakany J. EMBO J. 1993 Sep;12(9):3539-50. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&lis t_uids=7902810&dopt=Abstract %summary in vivo targeted mutagenesis of a regulatory element required for positioning the Hoxd-11 and Hoxd-10 expression boundaries. Gerard M, Chen JY, Gronemeyer H, Chambon P, Duboule D, Zakany J. Genes Dev 1996 Sep 15;10(18):2326-34. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=8824591&dopt=Abstract %define annotation %type LocusLink %range 100823 103220 %label HOXD10 %url http://www.ncbi.nlm.nih.gov/LocusLink/list.cgi?Q=HOXD10&ORG=&V=0 %define annotation %type Regulatory %range 104221 104808 %label A domain %summary corresponds to mouse element. Comparison of mouse and human HOX-4 complexes defines conserved sequences involved in the regulation of Hox-4.4. Renucci A, Zappavigna V, Zakany J, Izpisu a-Belmonte JC, Burki K, Duboule D. EMBO J. 1992 Apr;11(4):1459-68. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=1348690&dopt=Abstract %define annotation %type Regulatory %range 105348 105666 %label B domain %summary corresponds to mouse element. Comparison of mouse and human HOX-4 complexes defines conserved sequences involved in the regulation of Hox-4.4. Renucci A, Zappavigna V, Zakany J, Izpisu a-Belmonte JC, Burki K, Duboule D. EMBO J. 1992 Apr;11(4):1459-68. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=1348690&dopt=Abstract %define annotation %type Regulatory %range 106064 106192 %label C domain %summary corresponds to mouse element. Comparison of mouse and human HOX-4 complexes defines conserved sequences involved in the regulation of Hox-4.4. Renucci A, Zappavigna V, Zakany J, Izpisua-Belmonte JC, Burki K, Duboule D. EMBO J. 1992 Apr;11(4):1459-68. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=1348690&dopt=Abstract %define annotation %type Regulatory %range 106085 106199 %label Hox cross-talk region %summary HOX4 genes encode transcription factors with potential auto- and cross-regulatory capacities. Zappavigna V, Renucci A, Izpisua-Belmonte JC, Urier G, Peschle C, Duboule D. EMBO J. 1991 Dec;10(13):4177-87. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=1756725&dopt=Abstract %define annotation %type LocusLink %range 106788 108164 %label HOXD9 %url http://www.ncbi.nlm.nih.gov/LocusLink/list.cgi?Q=HOXD9&ORG=&V=0 %define annotation %type LocusLink %range 114356 115601 %label HOXD8 %url http://www.ncbi.nlm.nih.gov/LocusLink/list.cgi?Q=HOXD8&ORG=&V=0 %define annotation %type LocusLink %range 135623 136931 %label HOXD4 %url http://www.ncbi.nlm.nih.gov/LocusLink/list.cgi?Q=HOXD4&ORG=&V=0 %define annotation %type Regulatory %range 132941 133083 %label enhancer %summary HOXD4 retinoid-responsive enhancer. In vitro and transgenic analysis of a human HOXD4 retinoid-responsive enhancer. Morrison A, Moroni MC, Ariza-McNaughton L, Krumlauf R, Mavilio F. Development. 1996 Jun;122(6):1895-907. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?CMD=Text&DB=PubMed %summary full text %url http://www.biologists.com/Development/122/06/dev2048.html %define annotation %type LocusLink %range 153152 156263 %label HOXD3 %url http://www.ncbi.nlm.nih.gov/LocusLink/list.cgi?Q=HOXD3&ORG=&V=0 %define annotation %type Regulatory %range 155768 156087 %label HOXD3 %summary antisense transcripts Analysis of the Hoxd-3 gene: structure and localization of its sense and natural antisense transcripts. Bedford M, Arman E, Orr-Urtreger A, Lonai P. DNA Cell Biol. 1995 Apr;14(4):295-304. %url http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7710686&dopt=Abstract %define annotation %type TIGR %range 159230 162103 %label antisense %summary corresponds to Tiger clusters THC522703, THC523348 %url http://www.tigr.org/tdb/hgi/searching/reports.html %define annotation %type LocusLink %range 172791 174131 %label HOXD1 %url http://www.ncbi.nlm.nih.gov/LocusLink/list.cgi?Q=HOXD1&ORG=&V=0